Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00723 ATGAGTAACTGGTTAGGATTTTCTCTTACTCCACACTTGAGGATTGATGAAGAATTTGGTAGAGAAAATCAAAACCAAAATCAAGAACATCATGGTGAAGGATCAGAAATTATAGGAAGAAACTATGTTCCTCCTTCTTCTTCTCATCATCAACATCTTCATAATCACTTATCTGTTATGCCTCTGCGTTCTGATGGTTCACTCTGTGTTTCTGATACTTTCACTCACTCAGTTACACCTCAAGAATGGAGATATGAAAATGCAATAACTGATGGAAATTCAAATGAAGAGGGACCAAAACTTGAAGATTTTTTGGGATGTTACCAAAATCAAAACCAAAATAGTACTAACACTATTTCTAAAATTAATGTTAATGTAACACCAAGTTTTTGCACTAATAATAATACAGAGATTGAAACAAGGGAAAATCTAACAAACCAATCTTTGATTCACTCTTTCCATCATGGAAATTATGATAATAACAATAATAATCATCATGGTTTAATTCATGGTAATAGTATGTATAAATCTTGGATGAGTCAGAATCATTTTTCTTGTGATGGGAAAAATTCTAGTGATGGAAATGGTTTTCAATCTCTTAATTTAACTATGAGTCCTAGTGTGCAAAATGGTGTTAGTGTTGGTGTTGGTGGTGGTGCAATTTCAACTGTTCAAGTGAATGAAGATCCTAGGAAAAGGTCTTTGTCAAAATCTAATGCTACTAGAGAACCTGTTCCTCGTAAATCTATTGATACTTTTGGACAAAGAACTTCTCAATATCGTGGTGTTACAAGGCATAGATGGACAGGGAGATATGAGGCACATTTGTGGGATAATAGTTGCAGAAAAGAAGGGCAAACAAGGAAAGGAAGACAAGGTGGTTATGATAAGGAAGAAAAAGCAGCAAAAGCTTATGACTTAGCTGCACTGAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTATAAGCACTTATGAGAAGGAACTTGAAGAAATGAAGCACATGACTAGACAAGAATTTGTCGCCAATTTAAGAAGGAAAAGCAGTGGATTTTCAAGAGGGGCTTCTGTGTATAGAGGTGTGACAAGACACCATCAACATGGAAGGTGGCAGGCTAGGATAGGAAGGGTTGCAGGAAACAAAGATTTATATCTTGGCACATTTAGCACACAAGAAGAGGCTGCAGAAGCATATGATATTGCAGCAATCAAATTTAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTCAAGAGAATTTGCTCAAGCTCAACTCTAATCACCGGCGATCTCGCTAAACGCTCTCCTAAAGACTCGTCTGCAGCTCCTGCAGCCACAACCGAGGACTTCAATTCGTGCGGAAGTTCATCAACACCTTCTCAGCCACCTCCTCTAGCTATTACCGATGGCGAACAACATTCTGATGAATTGTCCAACATGGTTTGGAATTCCAACAGCGAGCAACCACCGCAGAATGAGTGCGGAAACAACACTAACATCAATGAATCGTCACAGCACGATTCAGAAAGCGGCAAGAATGAGATGAACCCTCAAAGTCCCAAATTACCTAATGAGTTTGGAGTGAGTGGAGCTGATTATGGACATGGTTACTTCACACTGAATGAACCAAAATATGATGATGGAAGCAATGAAAATGACCACATGAATAACAATAGGCTTGGAAATTTGGGTTTGGTTAATCAAGTTCCTATGTTTGCTTTGTGGAATGAATGA 1749 0.3814 MSNWLGFSLTPHLRIDEEFGRENQNQNQEHHGEGSEIIGRNYVPPSSSHHQHLHNHLSVMPLRSDGSLCVSDTFTHSVTPQEWRYENAITDGNSNEEGPKLEDFLGCYQNQNQNSTNTISKINVNVTPSFCTNNNTEIETRENLTNQSLIHSFHHGNYDNNNNNHHGLIHGNSMYKSWMSQNHFSCDGKNSSDGNGFQSLNLTMSPSVQNGVSVGVGGGAISTVQVNEDPRKRSLSKSNATREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAAKAYDLAALKYWGPTTHINFPISTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLITGDLAKRSPKDSSAAPAATTEDFNSCGSSSTPSQPPPLAITDGEQHSDELSNMVWNSNSEQPPQNECGNNTNINESSQHDSESGKNEMNPQSPKLPNEFGVSGADYGHGYFTLNEPKYDDGSNENDHMNNNRLGNLGLVNQVPMFALWNE 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00723 582 FunFam AP2-like ethylene-responsive transcription factor 357 418 - -
Trre15g00723 582 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 94 501 - -
Trre15g00723 582 CDD AP2 357 418 IPR001471 GO:0003700|GO:0006355
Trre15g00723 582 Pfam AP2 domain 357 408 IPR001471 GO:0003700|GO:0006355
Trre15g00723 582 Pfam AP2 domain 259 314 IPR001471 GO:0003700|GO:0006355
Trre15g00723 582 SUPERFAMILY DNA-binding domain 258 324 IPR016177 GO:0003677
Trre15g00723 582 MobiDBLite consensus disorder prediction 435 535 - -
Trre15g00723 582 SUPERFAMILY DNA-binding domain 357 418 IPR016177 GO:0003677
Trre15g00723 582 ProSiteProfiles AP2/ERF domain profile. 358 416 IPR001471 GO:0003700|GO:0006355
Trre15g00723 582 MobiDBLite consensus disorder prediction 22 36 - -
Trre15g00723 582 MobiDBLite consensus disorder prediction 223 246 - -
Trre15g00723 582 FunFam AP2-like ethylene-responsive transcription factor ANT 258 324 - -
Trre15g00723 582 Gene3D AP2/ERF domain 358 418 IPR036955 GO:0003700|GO:0006355
Trre15g00723 582 Gene3D AP2/ERF domain 258 324 IPR036955 GO:0003700|GO:0006355
Trre15g00723 582 ProSiteProfiles AP2/ERF domain profile. 259 322 IPR001471 GO:0003700|GO:0006355
Trre15g00723 582 CDD AP2 258 324 IPR001471 GO:0003700|GO:0006355
Trre15g00723 582 MobiDBLite consensus disorder prediction 445 528 - -
Trre15g00723 582 PRINTS Ethylene responsive element binding protein signature 260 271 IPR001471 GO:0003700|GO:0006355
Trre15g00723 582 PRINTS Ethylene responsive element binding protein signature 398 418 IPR001471 GO:0003700|GO:0006355
Trre15g00723 582 SMART rav1_2 259 328 IPR001471 GO:0003700|GO:0006355
Trre15g00723 582 SMART rav1_2 358 422 IPR001471 GO:0003700|GO:0006355
Trre15g00723 582 MobiDBLite consensus disorder prediction 22 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00723 Trre-Chr15 5339336 5343525 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00723 1 446 AP2-EREBP Transcription Factor Family AT1G72570 49.153 1.24e-135 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre15g00723 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00723 K09285 - gmx:100809762 798.505