Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00722 ATGAGTAACTGGTTAGGATTTTCTCTTACTCCACACTTGAGGATTGATGAAGAATTTGGTAGAGAAAATCAAAACCAAAATCAAGAACATCATGGTGAAGGATCAGAAATTATAGGAAGAAACTATGTTCCTCCTTCTTCTTCTCATCATCAACATCTTCATAATCACTTATCTGTTATGCCTCTGCGTTCTGATGGTTCACTCTGTGTTTCTGATACTTTCACTCACTCAGTTACACCTCAAGAATGGAGATATGAAAATGCAATAACTGATGGAAATTCAAATGAAGAGGGACCAAAACTTGAAGATTTTTTGGGATGTTACCAAAATCAAAACCAAAATAGTACTAACACTATTTCTAAAATTAATGTTAATGTAACACCAAGTTTTTGCACTAATAATAATACAGAGATTGAAACAAGGGAAAATCTAACAAACCAATCTTTGATTCACTCTTTCCATCATGGAAATTATGATAATAACAATAATAATCATCATGGTTTAATTCATGGTAATAGTATGTATAAATCTTGGATGAGTCAGAATCATTTTTCTTGTGATGGGAAAAATTCTAGTGATGGAAATGGTTTTCAATCTCTTAATTTAACTATGAGTCCTAGTGTGCAAAATGGTGTTAGTGTTGGTGTTGGTGGTGGTGCAATTTCAACTGTTCAAGTGAATGAAGATCCTAGGAAAAGGTCTTTGTCAAAATCTAATGCTACTAGAGAACCTGTTCCTCGTAAATCTATTGATACTTTTGGACAAAGAACTTCTCAATATCGTGGTGTTACAAGGCATAGATGGACAGGGAGATATGAGGCACATTTGTGGGATAATAGTTGCAGAAAAGAAGGGCAAACAAGGAAAGGAAGACAAGTTTACCTTGGTGGTTATGATAAGGAAGAAAAAGCAGCAAAAGCTTATGACTTAGCTGCACTGAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTATAAGCACTTATGAGAAGGAACTTGAAGAAATGAAGCACATGACTAGACAAGAATTTGTCGCCAATTTAAGAAGGAAAAGCAGTGGATTTTCAAGAGGGGCTTCTGTGTATAGAGGTGTGACAAGACACCATCAACATGGAAGGTGGCAGGCTAGGATAGGAAGGGTTGCAGGAAACAAAGATTTATATCTTGGCACATTTAGCACACAAGAAGAGGCTGCAGAAGCATATGATATTGCAGCAATCAAATTTAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTCAAGAGAATTTGCTCAAGCTCAACTCTAATCACCGGCGATCTCGCTAAACGCTCTCCTAAAGACTCGTCTGCAGCTCCTGCAGCCACAACCGAGGACTTCAATTCGTGCGGAAGTTCATCAACACCTTCTCAGCCACCTCCTCTAGCTATTACCGATGGCGAACAACATTCTGATGAATTGTCCAACATGGTTTGGAATTCCAACAGCGAGCAACCACCGCAGAATGAGTGCGGAAACAACACTAACATCAATGAATCGTCACAGCACGATTCAGAAAGCGGCAAGAATGAGATGAACCCTCAAAGTCCCAAATTACCTAATGAGTTTGGAGTGAGTGGAGCTGATTATGGACATGGTTACTTCACACTGAATGAACCAAAATATGATGATGGAAGCAATGAAAATGACCACATGAATAACAATAGGCTTGGAAATTTGGGTTTGGTTAATCAAGTTCCTATGTTTGCTTTGTGGAATGAATGA 1758 0.3811 MSNWLGFSLTPHLRIDEEFGRENQNQNQEHHGEGSEIIGRNYVPPSSSHHQHLHNHLSVMPLRSDGSLCVSDTFTHSVTPQEWRYENAITDGNSNEEGPKLEDFLGCYQNQNQNSTNTISKINVNVTPSFCTNNNTEIETRENLTNQSLIHSFHHGNYDNNNNNHHGLIHGNSMYKSWMSQNHFSCDGKNSSDGNGFQSLNLTMSPSVQNGVSVGVGGGAISTVQVNEDPRKRSLSKSNATREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAAKAYDLAALKYWGPTTHINFPISTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLITGDLAKRSPKDSSAAPAATTEDFNSCGSSSTPSQPPPLAITDGEQHSDELSNMVWNSNSEQPPQNECGNNTNINESSQHDSESGKNEMNPQSPKLPNEFGVSGADYGHGYFTLNEPKYDDGSNENDHMNNNRLGNLGLVNQVPMFALWNE 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00722 585 PRINTS Ethylene responsive element binding protein signature 260 271 IPR001471 GO:0003700|GO:0006355
Trre15g00722 585 PRINTS Ethylene responsive element binding protein signature 401 421 IPR001471 GO:0003700|GO:0006355
Trre15g00722 585 CDD AP2 360 421 IPR001471 GO:0003700|GO:0006355
Trre15g00722 585 SUPERFAMILY DNA-binding domain 258 327 IPR016177 GO:0003677
Trre15g00722 585 MobiDBLite consensus disorder prediction 22 36 - -
Trre15g00722 585 Gene3D AP2/ERF domain 258 327 IPR036955 GO:0003700|GO:0006355
Trre15g00722 585 Gene3D AP2/ERF domain 361 421 IPR036955 GO:0003700|GO:0006355
Trre15g00722 585 MobiDBLite consensus disorder prediction 448 531 - -
Trre15g00722 585 CDD AP2 258 327 IPR001471 GO:0003700|GO:0006355
Trre15g00722 585 MobiDBLite consensus disorder prediction 223 246 - -
Trre15g00722 585 SMART rav1_2 259 331 IPR001471 GO:0003700|GO:0006355
Trre15g00722 585 SMART rav1_2 361 425 IPR001471 GO:0003700|GO:0006355
Trre15g00722 585 FunFam AP2-like ethylene-responsive transcription factor ANT 258 327 - -
Trre15g00722 585 SUPERFAMILY DNA-binding domain 360 421 IPR016177 GO:0003677
Trre15g00722 585 ProSiteProfiles AP2/ERF domain profile. 361 419 IPR001471 GO:0003700|GO:0006355
Trre15g00722 585 ProSiteProfiles AP2/ERF domain profile. 259 325 IPR001471 GO:0003700|GO:0006355
Trre15g00722 585 Pfam AP2 domain 360 411 IPR001471 GO:0003700|GO:0006355
Trre15g00722 585 Pfam AP2 domain 259 317 IPR001471 GO:0003700|GO:0006355
Trre15g00722 585 MobiDBLite consensus disorder prediction 22 52 - -
Trre15g00722 585 MobiDBLite consensus disorder prediction 438 538 - -
Trre15g00722 585 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 94 504 - -
Trre15g00722 585 FunFam AP2-like ethylene-responsive transcription factor 360 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00722 Trre-Chr15 5339336 5343525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00722 1 449 AP2-EREBP Transcription Factor Family AT1G72570 49.788 5.04e-140 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre15g00722 AP2 7.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00722 K09285 - gmx:100809762 809.675