Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00704 ATGGAAACAGTGATTGGAATTGAGGATAATGATGATGGGAAGCTCGAAGGCAGTGGAGTTGATAGAAGCAGTTCTGCTTTGTTTTCACCTAAGCAGATTTCCAACCCAGTTGTGTACAAGCTTGTTCGGGTTGAAGGTGATGGGAGGTTAGTGCCTGCAACAGATGATGAAGTAATGGAGGTGGAGGATTTTCTTGAATATGAAAACAGTGATATGCGTGTTGTTGCAGACACTGGACAAAGTTTGGAATGCATATCAATCGAAAGATCATCTTCTGGGAAGCTTCGATTAGAGTGCTCAGAAGGCACTTCAGAGGCAGATTTGGGGAAGCTAAATGCAAAGTTTCAGATGCTGCAAAAGGTTAAACAGGAAGAGAAACTTCGTTTGTCGTCTCGATCACCTGTTCGTTCTCATGTACAAATAGATAGCCAGTATTCTGCTGATAATCCTGTCATAAATGACAAGGTTCGGTCCGAAACTCCTTACCAGGAAGCACCTTCTATAGCATCGAGTTTAAATTACAGTCATAGCAATCAATCTGGTAGTATTGATCAGTGTTCCAGACCTTCTGAAGGAATGATAGAAAGTGGATCATCTGCTTCTGCTGTCAATTCCGCTTTGACGCATGACTTTTCCATGACAGACGGAGAAATATGTTTGGACAAGTTGTCGATCAAAGAACTTCATGAACTGTTTAAGGTCACTTTTGGTCGGGAAACTACTGTGAAAGATAAACAGTGGTTGAGGAGGAGGATTGCTATGAGTCTAACTAACTCATGCGATGTTTCAGCAACAACATTCACTGTTAAAGATAACAAAATCACTAGAAAATGTGAAGAAGAATGTTCTGGAAATGTGAGTGCTGCAACTGTAATCTCTGTGGAAAATATGGCTGGAGAGGGGGATGCTAAGTATAAGGATTCATGTGCAGTGGAGGATTGCGGAGTTGATGATAACCAAGTCGCTTCTGAAACAAGACTGGAAAATCTTAATAATGACCATGAATTAGGAGATGAGGATCAGCAGAGAGAAGAGAGAGCTGCGAAAAGAATGCGTAAGCCCACCAAGCGATATATTGAAGAGCTCTCTGAAAATGAATCTAGAGAACACAATCCTAAGTCGTCAAGTTCCAATAAAAATACGGGACACAGACATGTTTCTCCAACTTCTTATGCCAGGCCTGCTAGGAATGTTTTACCAGAGGCAAGAACATTTGTCACCAGGTTAGACTCTCTTGGAGGTTCTGGTGTCCAAATTCCTTGTGTTTCTCGGGTTCGAAGAAGTCGTCCAAGGACAAATATCACGTCTCTTATGAAATTTCATCCAACTGGCATGAGTGAGGCTGCAAAATTAGGCAATAAAGTTGTTAGAGGTCATGGTTCTGGCGCTGATAGCGTGATTCAGGGCAAAGTCTCAAAGCCAACTTCCATGCCTGTGAAGATTCATCAGCCTGTGAAGATTCATCAGCCGGTGAGACCAACCGAGTCTGCTGGTGATAGATTGTCCAAGTCTACTTCTGAATCTGGAAAAGAGAAGCAGTGTCCAGTAATTGTCACAACCGAACCAAGGCAGGAATCGAGGCCGGAAAAAATAGATACATCTAGCTGTACTGAAGAGCGCAATATAGTTACTGTTCCCACTGCTAAAGGTGGAATGAGGAGGAAACATCATCGTGCATGGACCCTTGTTGAGGTAATGAAATTGATTGAAGGTGTGTCACGGTGTGGACCAGGGAGGTGGTCTGAGATCAAACGGCTCTCCTTTTCTTCGTACTCGCATCGTACCTCTGTTGATCTCAAGGATAAATGGAGGAATTTGCTCAAAGCTAGCTTTGCACCGACACCTGCGGATGAGGGGATGAATTCGCGGAAGCATGGTACAGCTCCGATTCCTGAGCCAATTCTAGTACGCGTAAGAGAGCTTGCAGAGATAAATTCTCAAGTACCTCCAAATTCCAGCTCAAGCAAGTTAACAACAACTGGTGGTACAGTGAGTATGCATGGAGACAGATTGGGGTACTTGTAG 2025 0.4341 METVIGIEDNDDGKLEGSGVDRSSSALFSPKQISNPVVYKLVRVEGDGRLVPATDDEVMEVEDFLEYENSDMRVVADTGQSLECISIERSSSGKLRLECSEGTSEADLGKLNAKFQMLQKVKQEEKLRLSSRSPVRSHVQIDSQYSADNPVINDKVRSETPYQEAPSIASSLNYSHSNQSGSIDQCSRPSEGMIESGSSASAVNSALTHDFSMTDGEICLDKLSIKELHELFKVTFGRETTVKDKQWLRRRIAMSLTNSCDVSATTFTVKDNKITRKCEEECSGNVSAATVISVENMAGEGDAKYKDSCAVEDCGVDDNQVASETRLENLNNDHELGDEDQQREERAAKRMRKPTKRYIEELSENESREHNPKSSSSNKNTGHRHVSPTSYARPARNVLPEARTFVTRLDSLGGSGVQIPCVSRVRRSRPRTNITSLMKFHPTGMSEAAKLGNKVVRGHGSGADSVIQGKVSKPTSMPVKIHQPVKIHQPVRPTESAGDRLSKSTSESGKEKQCPVIVTTEPRQESRPEKIDTSSCTEERNIVTVPTAKGGMRRKHHRAWTLVEVMKLIEGVSRCGPGRWSEIKRLSFSSYSHRTSVDLKDKWRNLLKASFAPTPADEGMNSRKHGTAPIPEPILVRVRELAEINSQVPPNSSSSKLTTTGGTVSMHGDRLGYL 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00704 674 MobiDBLite consensus disorder prediction 498 513 - -
Trre15g00704 674 SUPERFAMILY Homeodomain-like 554 614 IPR009057 -
Trre15g00704 674 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 23 658 - -
Trre15g00704 674 SMART sant 556 609 IPR001005 -
Trre15g00704 674 Gene3D - 547 655 - -
Trre15g00704 674 ProSiteProfiles Myb-like domain profile. 560 607 IPR001005 -
Trre15g00704 674 MobiDBLite consensus disorder prediction 173 195 - -
Trre15g00704 674 Pfam Myb-like DNA-binding domain 559 607 IPR001005 -
Trre15g00704 674 CDD SANT_TRF 558 608 - -
Trre15g00704 674 MobiDBLite consensus disorder prediction 646 665 - -
Trre15g00704 674 MobiDBLite consensus disorder prediction 328 373 - -
Trre15g00704 674 MobiDBLite consensus disorder prediction 325 395 - -
Trre15g00704 674 MobiDBLite consensus disorder prediction 646 668 - -
Trre15g00704 674 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 552 611 IPR017930 -
Trre15g00704 674 MobiDBLite consensus disorder prediction 489 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00704 Trre-Chr15 5244721 5249565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00704 560 606 Single Myb Histone (SMH) Gene Family AT1G72740 46.939 4.26e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre15g00704 Myb_DNA-binding 4.3e-07 CL0123