Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00703 ATGGAAACAGTGATTGGAATTGAGGATAATGATGATGGGAAGCTCGAAGGCAGTGGAGTTGATAGAAGCAGTTCTGCTTTGTTTTCACCTAAGCAGATTTCCAACCCAGTTGTGTACAAGCTTGTTCGGGTTGAAGGTGATGGGAGGTTAGTGCCTGCAACAGATGATGAAGTAATGGAGGTGGAGGATTTTCTTGAATATGAAAACAGTGATATGCGTGTTGTTGCAGACACTGGACAAAGTTTGGAATGCATATCAATCGAAAGATCATCTTCTGGGAAGCTTCGATTAGAGTGCTCAGAAGGCACTTCAGAGGCAGATTTGGGGAAGCTAAATGCAAAGTTTCAGTATGTTGAACAGATGCTGCAAAAGGTTAAACAGGAAGAGAAACTTCGTTTGTCGTCTCGATCACCTGTTCGTTCTCATGTACAAATAGATAGCCAGTATTCTGCTGATAATCCTGTCATAAATGACAAGGTTCGGTCCGAAACTCCTTACCAGGAAGCACCTTCTATAGCATCGAGTTTAAATTACAGTCATAGCAATCAATCTGGTAGTATTGATCAGTGTTCCAGACCTTCTGAAGGAATGATAGAAAGTGGATCATCTGCTTCTGCTGTCAATTCCGCTTTGACGCATGACTTTTCCATGACAGACGGAGAAATATGTTTGGACAAGTTGTCGATCAAAGAACTTCATGAACTGTTTAAGGTCACTTTTGGTCGGGAAACTACTGTGAAAGATAAACAGTGGTTGAGGAGGAGGATTGCTATGAGTCTAACTAACTCATGCGATGTTTCAGCAACAACATTCACTGTTAAAGATAACAAAATCACTAGAAAATGTGAAGAAGAATGTTCTGGAAATGTGAGTGCTGCAACTGTAATCTCTGTGGAAAATATGGCTGGAGAGGGGGATGCTAAGTATAAGGATTCATGTGCAGTGGAGGATTGCGGAGTTGATGATAACCAAGTCGCTTCTGAAACAAGACTGGAAAATCTTAATAATGACCATGAATTAGGAGATGAGGATCAGCAGAGAGAAGAGAGAGCTGCGAAAAGAATGCGTAAGCCCACCAAGCGATATATTGAAGAGCTCTCTGAAAATGAATCTAGAGAACACAATCCTAAGTCGTCAAGTTCCAATAAAAATACGGGACACAGACATGTTTCTCCAACTTCTTATGCCAGGCCTGCTAGGAATGTTTTACCAGAGGCAAGAACATTTGTCACCAGGTTAGACTCTCTTGGAGGTTCTGGTGTCCAAATTCCTTGTGTTTCTCGGGTTCGAAGAAGTCGTCCAAGGACAAATATCACGTCTCTTATGAAATTTCATCCAACTGGCATGAGTGAGGCTGCAAAATTAGGCAATAAAGTTGTTAGAGGTCATGGTTCTGGCGCTGATAGCGTGATTCAGGGCAAAGTCTCAAAGCCAACTTCCATGCCTGTGAAGATTCATCAGCCTGTGAAGATTCATCAGCCGGTGAGACCAACCGAGTCTGCTGGTGATAGATTGTCCAAGTCTACTTCTGAATCTGGAAAAGAGAAGCAGTGTCCAGTAATTGTCACAACCGAACCAAGGCAGGAATCGAGGCCGGAAAAAATAGATACATCTAGCTGTACTGAAGAGCGCAATATAGTTACTGTTCCCACTGCTAAAGGTGGAATGAGGAGGAAACATCATCGTGCATGGACCCTTGTTGAGGTAATGAAATTGATTGAAGGTGTGTCACGGTGTGGACCAGGGAGGTGGTCTGAGATCAAACGGCTCTCCTTTTCTTCGTACTCGCATCGTACCTCTGTTGATCTCAAGGATAAATGGAGGAATTTGCTCAAAGCTAGCTTTGCACCGACACCTGCGGATGAGGGGATGAATTCGCGGAAGCATGGTACAGCTCCGATTCCTGAGCCAATTCTAGTACGCGTAAGAGAGCTTGCAGAGATAAATTCTCAAGTACCTCCAAATTCCAGCTCAAGCAAGTTAACAACAACTGGTGGTACAGTGAGTATGCATGGAGACAGATTGGGGTACTTGTAG 2037 0.4335 METVIGIEDNDDGKLEGSGVDRSSSALFSPKQISNPVVYKLVRVEGDGRLVPATDDEVMEVEDFLEYENSDMRVVADTGQSLECISIERSSSGKLRLECSEGTSEADLGKLNAKFQYVEQMLQKVKQEEKLRLSSRSPVRSHVQIDSQYSADNPVINDKVRSETPYQEAPSIASSLNYSHSNQSGSIDQCSRPSEGMIESGSSASAVNSALTHDFSMTDGEICLDKLSIKELHELFKVTFGRETTVKDKQWLRRRIAMSLTNSCDVSATTFTVKDNKITRKCEEECSGNVSAATVISVENMAGEGDAKYKDSCAVEDCGVDDNQVASETRLENLNNDHELGDEDQQREERAAKRMRKPTKRYIEELSENESREHNPKSSSSNKNTGHRHVSPTSYARPARNVLPEARTFVTRLDSLGGSGVQIPCVSRVRRSRPRTNITSLMKFHPTGMSEAAKLGNKVVRGHGSGADSVIQGKVSKPTSMPVKIHQPVKIHQPVRPTESAGDRLSKSTSESGKEKQCPVIVTTEPRQESRPEKIDTSSCTEERNIVTVPTAKGGMRRKHHRAWTLVEVMKLIEGVSRCGPGRWSEIKRLSFSSYSHRTSVDLKDKWRNLLKASFAPTPADEGMNSRKHGTAPIPEPILVRVRELAEINSQVPPNSSSSKLTTTGGTVSMHGDRLGYL 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00703 678 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 23 662 - -
Trre15g00703 678 MobiDBLite consensus disorder prediction 502 517 - -
Trre15g00703 678 SMART sant 560 613 IPR001005 -
Trre15g00703 678 ProSiteProfiles Myb-like domain profile. 564 611 IPR001005 -
Trre15g00703 678 SUPERFAMILY Homeodomain-like 558 618 IPR009057 -
Trre15g00703 678 MobiDBLite consensus disorder prediction 177 199 - -
Trre15g00703 678 CDD SANT_TRF 562 612 - -
Trre15g00703 678 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 556 615 IPR017930 -
Trre15g00703 678 MobiDBLite consensus disorder prediction 332 377 - -
Trre15g00703 678 MobiDBLite consensus disorder prediction 650 669 - -
Trre15g00703 678 Gene3D - 551 659 - -
Trre15g00703 678 MobiDBLite consensus disorder prediction 329 399 - -
Trre15g00703 678 Pfam Myb-like DNA-binding domain 563 611 IPR001005 -
Trre15g00703 678 MobiDBLite consensus disorder prediction 650 672 - -
Trre15g00703 678 MobiDBLite consensus disorder prediction 493 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00703 Trre-Chr15 5244721 5249565 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00703 564 610 Single Myb Histone (SMH) Gene Family AT1G72740 46.939 4.21e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre15g00703 Myb_DNA-binding 4.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00703 - - tpra:123883109 1190.64