Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00702 ATGGAAACAGTGATTGGAATTGAGGATAATGATGATGGGAAGCTCGAAGGCAGTGGAGTTGATAGAAGCAGTTCTGCTTTGTTTTCACCTAAGCAGATTTCCAACCCAGTTGTGTACAAGCTTGTTCGGGTTGAAGGTGATGGGAGGTTAGTGCCTGCAACAGATGATGAAGTAATGGAGGTGGAGGATTTTCTTGAATATGAAAACAGTGATATGCGTGTTGTTGCAGACACTGGACAAAGTTTGGAATGCATATCAATCGAAAGATCATCTTCTGGGAAGCTTCGATTAGAGTGCTCAGAAGGTGTTTCACAATTAGGCACTTCAGAGGCAGATTTGGGGAAGCTAAATGCAAAGTTTCAGATGCTGCAAAAGGTTAAACAGGAAGAGAAACTTCGTTTGTCGTCTCGATCACCTGTTCGTTCTCATGTACAAATAGATAGCCAGTATTCTGCTGATAATCCTGTCATAAATGACAAGGTTCGGTCCGAAACTCCTTACCAGGAAGCACCTTCTATAGCATCGAGTTTAAATTACAGTCATAGCAATCAATCTGGTAGTATTGATCAGTGTTCCAGACCTTCTGAAGGAATGATAGAAAGTGGATCATCTGCTTCTGCTGTCAATTCCGCTTTGACGCATGACTTTTCCATGACAGACGGAGAAATATGTTTGGACAAGTTGTCGATCAAAGAACTTCATGAACTGTTTAAGGTCACTTTTGGTCGGGAAACTACTGTGAAAGATAAACAGTGGTTGAGGAGGAGGATTGCTATGAGTCTAACTAACTCATGCGATGTTTCAGCAACAACATTCACTGTTAAAGATAACAAAATCACTAGAAAATGTGAAGAAGAATGTTCTGGAAATGTGAGTGCTGCAACTGTAATCTCTGTGGAAAATATGGCTGGAGAGGGGGATGCTAAGTATAAGGATTCATGTGCAGTGGAGGATTGCGGAGTTGATGATAACCAAGTCGCTTCTGAAACAAGACTGGAAAATCTTAATAATGACCATGAATTAGGAGATGAGGATCAGCAGAGAGAAGAGAGAGCTGCGAAAAGAATGCGTAAGCCCACCAAGCGATATATTGAAGAGCTCTCTGAAAATGAATCTAGAGAACACAATCCTAAGTCGTCAAGTTCCAATAAAAATACGGGACACAGACATGTTTCTCCAACTTCTTATGCCAGGCCTGCTAGGAATGTTTTACCAGAGGCAAGAACATTTGTCACCAGGTTAGACTCTCTTGGAGGTTCTGGTGTCCAAATTCCTTGTGTTTCTCGGGTTCGAAGAAGTCGTCCAAGGACAAATATCACGTCTCTTATGAAATTTCATCCAACTGGCATGAGTGAGGCTGCAAAATTAGGCAATAAAGTTGTTAGAGGTCATGGTTCTGGCGCTGATAGCGTGATTCAGGGCAAAGTCTCAAAGCCAACTTCCATGCCTGTGAAGATTCATCAGCCTGTGAAGATTCATCAGCCGGTGAGACCAACCGAGTCTGCTGGTGATAGATTGTCCAAGTCTACTTCTGAATCTGGAAAAGAGAAGCAGTGTCCAGTAATTGTCACAACCGAACCAAGGCAGGAATCGAGGCCGGAAAAAATAGATACATCTAGCTGTACTGAAGAGCGCAATATAGTTACTGTTCCCACTGCTAAAGGTGGAATGAGGAGGAAACATCATCGTGCATGGACCCTTGTTGAGGTAATGAAATTGATTGAAGGTGTGTCACGGTGTGGACCAGGGAGGTGGTCTGAGATCAAACGGCTCTCCTTTTCTTCGTACTCGCATCGTACCTCTGTTGATCTCAAGGATAAATGGAGGAATTTGCTCAAAGCTAGCTTTGCACCGACACCTGCGGATGAGGGGATGAATTCGCGGAAGCATGGTACAGCTCCGATTCCTGAGCCAATTCTAGTACGCGTAAGAGAGCTTGCAGAGATAAATTCTCAAGTACCTCCAAATTCCAGCTCAAGCAAGTTAACAACAACTGGTGGTACAGTGAGTATGCATGGAGACAGATTGGGGTACTTGTAG 2040 0.4333 METVIGIEDNDDGKLEGSGVDRSSSALFSPKQISNPVVYKLVRVEGDGRLVPATDDEVMEVEDFLEYENSDMRVVADTGQSLECISIERSSSGKLRLECSEGVSQLGTSEADLGKLNAKFQMLQKVKQEEKLRLSSRSPVRSHVQIDSQYSADNPVINDKVRSETPYQEAPSIASSLNYSHSNQSGSIDQCSRPSEGMIESGSSASAVNSALTHDFSMTDGEICLDKLSIKELHELFKVTFGRETTVKDKQWLRRRIAMSLTNSCDVSATTFTVKDNKITRKCEEECSGNVSAATVISVENMAGEGDAKYKDSCAVEDCGVDDNQVASETRLENLNNDHELGDEDQQREERAAKRMRKPTKRYIEELSENESREHNPKSSSSNKNTGHRHVSPTSYARPARNVLPEARTFVTRLDSLGGSGVQIPCVSRVRRSRPRTNITSLMKFHPTGMSEAAKLGNKVVRGHGSGADSVIQGKVSKPTSMPVKIHQPVKIHQPVRPTESAGDRLSKSTSESGKEKQCPVIVTTEPRQESRPEKIDTSSCTEERNIVTVPTAKGGMRRKHHRAWTLVEVMKLIEGVSRCGPGRWSEIKRLSFSSYSHRTSVDLKDKWRNLLKASFAPTPADEGMNSRKHGTAPIPEPILVRVRELAEINSQVPPNSSSSKLTTTGGTVSMHGDRLGYL 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00702 679 MobiDBLite consensus disorder prediction 330 400 - -
Trre15g00702 679 ProSiteProfiles Myb-like domain profile. 565 612 IPR001005 -
Trre15g00702 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 557 616 IPR017930 -
Trre15g00702 679 SMART sant 561 614 IPR001005 -
Trre15g00702 679 MobiDBLite consensus disorder prediction 178 200 - -
Trre15g00702 679 SUPERFAMILY Homeodomain-like 559 619 IPR009057 -
Trre15g00702 679 MobiDBLite consensus disorder prediction 651 670 - -
Trre15g00702 679 Pfam Myb-like DNA-binding domain 564 612 IPR001005 -
Trre15g00702 679 MobiDBLite consensus disorder prediction 651 673 - -
Trre15g00702 679 MobiDBLite consensus disorder prediction 494 542 - -
Trre15g00702 679 Gene3D - 552 660 - -
Trre15g00702 679 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 23 663 - -
Trre15g00702 679 MobiDBLite consensus disorder prediction 503 518 - -
Trre15g00702 679 CDD SANT_TRF 563 613 - -
Trre15g00702 679 MobiDBLite consensus disorder prediction 333 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00702 Trre-Chr15 5244721 5249565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00702 565 611 Single Myb Histone (SMH) Gene Family AT1G72740 46.939 4.18e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre15g00702 Myb_DNA-binding 4.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00702 - - tpra:123883109 1192.18