Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00700 ATGAAAAATAGTGAATCCAGTAGTAGGATAAGTTTTGTTGTTTATCTCCTTCTCTTGCTTATTTCAAAACCATGGGGAGTATCTGCAAGCATAATTCCAAATCCAATTTCAAACAAGCATTATTCTACATATCCTGTGATATTTTCTCCTTCCAGCCTTGTTCCTGACATAAAATATGATGTCTTCGTGCTAAGCTGGAGATCTGCTTTGAAGCAATCTACCAATATGTCTGGATTTGATTCATTAAATTTTTCGGATGATGCTAAGCTTGTCGAAGAAATAGTTCAAAATGTGTTGACAAAGTTGAATCAAGTGGACCAAGGAAAGTCAAAAGGACTTGTAGGAATTGAAAAGCAAATTTCACCTATAGAATCATTGTTGCATTTAGAGTTGGAAGATGTCCGTGTTCTTGGAATTTGGGGTATGCCTGGTATTGGTAAAACAACTATTACTGAAGAAGTATTTCGTAGACTGCATTCTAAATACGAAAGTTATTGTTTTATGGCTAATGTAAGAGAAGAATCAGAAAGATATGGCACAAACAATTTGAGGTTAAGAAACAAGCTTTTATCCACTCTATTAAAGGAAGAAAATTTGAAAGATGACCTTATTAATGGATTACCTCCTTTGGTTAAGAAAAGGCTTCGCCGCATGAAGGTTCTTATTGTTCTTGATGATGTCAAAGATGCAGAGCAACTAGAAGTTTTGATTGGAACAGATGAATGGTTAGGACCAGGAAGTAGAATCATCATAACTACTAGAGATAAGCAAGTACTAGCTGGAAAAGTTGATGATATCTACGAGGTTGAGCCATTGGACTCTGCTGAATCTTTTCAACTTTTCAATCTGCATGCCTTTACTAAACATGAGCATCTTGAAATAGAGTACCATAAGCTATCAGAGAAGATGGTAGATTATACCAAAGGTGTCCCACTAGTTCTTAAAGCTTTAGCTAACCTTCTTTGTGGGAAAGATAAAGACATATGGGAAAGCCAATCAAGGATTTTGAAAATTGAGCAGATTGAAAATGTCCATGATGTTTTCAGATTGATATACACTAATCTTGATTATCATGAGAAGAATATATTCTTGGATATTGCCTGCTTTTTTGATGGATTGAAATTGAATCTTGACCTCATAAAACTTCTATTGAAAGATCGTCATTATTCCGTGAGCACTAAATTAGACAGGCTGAAAGATAAAGCTCTTGTAACTATTTCTCAACAAAGCATTGTATCAATGCATGACATTATACAAGAAACCGCTTGGGAAATTGTACGACAGGAATCTGTTGAAGAACCTGGAAGCCGAAGCCGACTATTTGATCCTGATGACATTTATCATGTATTGAAAGATGACAAGGGAAGTGAAGCCATCAGAAGTATGGCCATTAGATTATCTGAAATTAAGGAGCTGCAGTTAAGCCCTCAAGTATTTGCCAAGATGAGCAAGTTGAAATTTTTGGATATTTACACTAAGGGGTCTCCAAATGAAGGTAGTTTGTCTCTTCCTCGAGGGCTTGAATTTTTGCCTAATGAACTGAGATATCTTCGTTGGGAGTATTACCCTTTGGAATCCTTGCCATCCAAGTTTTCTACAGAAAACCTTGTTACATTGAGCTTGCCTTATAGCCGATTGAAAAAACTTTGGCATGGAGTGAAAGATCTTGGGAATTTGAATGTCCTGATAGTCCATTCATCCACACTCCTAACAGAGCTACCGGACTTTTCAAAGGCCGCAAGTCTTGAAATACTGGACCTTCATTTCTGTGTAGGGTTGACTAGTGTCCATCCATCTGTTTTCTCTCTCAAAAAGCTAAAGAAACTGGATCTGAGTGGATGTGTTTCCCTTACAAGCCTTCAAAGCAATAATACCCATTTAAGTTCCCTTAGTTATCTCTCCCTCTACAACTGCACATCACTGAAGGAATTTTCAGTGACCTCGAAGAATATGAACGAACTGAATTTAGAACTCACAGGTATCAAAGAACTACCCTCATCAATTGGACTTCAAACCAAACTTGAAAAGTTACATCTCGGACACACTCACATTGAGAGCTTGCCTAGGAGCATCAAGAATCTTACAAAGTTGAAACAACTAGGCTTGCATCATTGCAGAGAGCTTCAAACTCTACCGGAGCTTCCTCTATCGCTAGAAATACTAGCTGCCATTGGTTGTGTATCACTAGAGAATGTAGTGTTTGGTTCAACTGCTAGCGAACAACTTAAGGAAAAGAGGAAAAGGGTTACCTTCTGGAATTGCCTTAAACTAAATGAGCCATCTCTCAAGGCTATTGGGTTGAATGCTCAAATTAACATGATGAGCTTTTCACACAAACATATATCCACATGCGATCGTAATCGTGATCGTCATCATGATCATGATCACGATCTTAATCAACACATGTACGTGTATCCAGGTAGCAAAATTCCAGAGTGGTTGGAATATAGTACAACTACAAATGATTTCATAACTATTGATCTTTCTTCTGCTCCTTATTTCTCTAAGTTGGGTTTTATTTTTGGCTTCATCATTCCAACCATCTCATCAGAGGGTTCAATTCTTAAATTCAAAATCAGTGATTGTGATGGTGAAGATGAAGGTATTAAAGTGTACTTGGACAGACCGCATCACGGAATTGAATCGGATCATGTGTATCTAATGTATGACCCAAGATTGTCTCATTACCTAGCTAGCCGAGTCAATGATTGGTCAATGATTAAAATTCAGGTTAGAGCATCATCAAGAACACCGACATCACAGTACATGCCAGTGCAGTTAAGAGGGTTTGGGGTTAGCCTAGTAACTCCTTCACTATATGACAAGTTTAAACAGCAATTGGAATTTGGTGATGGTATTGTTGTTCCAGATAATACATGTTCGGTGGAAGAAAGATCGATGTTTACAGGAATTTAA 2916 0.3745 MKNSESSSRISFVVYLLLLLISKPWGVSASIIPNPISNKHYSTYPVIFSPSSLVPDIKYDVFVLSWRSALKQSTNMSGFDSLNFSDDAKLVEEIVQNVLTKLNQVDQGKSKGLVGIEKQISPIESLLHLELEDVRVLGIWGMPGIGKTTITEEVFRRLHSKYESYCFMANVREESERYGTNNLRLRNKLLSTLLKEENLKDDLINGLPPLVKKRLRRMKVLIVLDDVKDAEQLEVLIGTDEWLGPGSRIIITTRDKQVLAGKVDDIYEVEPLDSAESFQLFNLHAFTKHEHLEIEYHKLSEKMVDYTKGVPLVLKALANLLCGKDKDIWESQSRILKIEQIENVHDVFRLIYTNLDYHEKNIFLDIACFFDGLKLNLDLIKLLLKDRHYSVSTKLDRLKDKALVTISQQSIVSMHDIIQETAWEIVRQESVEEPGSRSRLFDPDDIYHVLKDDKGSEAIRSMAIRLSEIKELQLSPQVFAKMSKLKFLDIYTKGSPNEGSLSLPRGLEFLPNELRYLRWEYYPLESLPSKFSTENLVTLSLPYSRLKKLWHGVKDLGNLNVLIVHSSTLLTELPDFSKAASLEILDLHFCVGLTSVHPSVFSLKKLKKLDLSGCVSLTSLQSNNTHLSSLSYLSLYNCTSLKEFSVTSKNMNELNLELTGIKELPSSIGLQTKLEKLHLGHTHIESLPRSIKNLTKLKQLGLHHCRELQTLPELPLSLEILAAIGCVSLENVVFGSTASEQLKEKRKRVTFWNCLKLNEPSLKAIGLNAQINMMSFSHKHISTCDRNRDRHHDHDHDLNQHMYVYPGSKIPEWLEYSTTTNDFITIDLSSAPYFSKLGFIFGFIIPTISSEGSILKFKISDCDGEDEGIKVYLDRPHHGIESDHVYLMYDPRLSHYLASRVNDWSMIKIQVRASSRTPTSQYMPVQLRGFGVSLVTPSLYDKFKQQLEFGDGIVVPDNTCSVEERSMFTGI 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00700 971 Gene3D Ribonuclease Inhibitor 650 775 IPR032675 -
Trre15g00700 971 Gene3D Ribonuclease Inhibitor 448 649 IPR032675 -
Trre15g00700 971 SUPERFAMILY "Winged helix" DNA-binding domain 344 451 IPR036390 -
Trre15g00700 971 Pfam Leucine Rich Repeat 535 554 IPR011713 -
Trre15g00700 971 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 366 IPR027417 -
Trre15g00700 971 Gene3D - 54 101 IPR035897 -
Trre15g00700 971 SUPERFAMILY L domain-like 464 782 - -
Trre15g00700 971 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 56 646 IPR044974 GO:0006952
Trre15g00700 971 PRINTS Disease resistance protein signature 214 228 - -
Trre15g00700 971 PRINTS Disease resistance protein signature 601 617 - -
Trre15g00700 971 PRINTS Disease resistance protein signature 136 151 - -
Trre15g00700 971 PRINTS Disease resistance protein signature 307 321 - -
Trre15g00700 971 Pfam NB-ARC domain 131 342 IPR002182 GO:0043531
Trre15g00700 971 Gene3D - 272 356 IPR042197 -
Trre15g00700 971 Gene3D - 102 265 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00700 Trre-Chr15 5235351 5239992 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00700 44 721 WRKY Transcription Factor Family AT4G12020 37.500 1.52e-116 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00700 - - tpra:123883104 1645.17