Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00698 ATGGACTCACGCACACAGTATAATTCTTATACCGTTGAAGATGTCTTTCAAGATTTTAAGGGCCGCCGAGCTGGTCTCATCAAAGCTCTCACCACTGATGCTGATGATTTGTATAACCAATGCGATCCCGACAACGAAAACCTGTGTTTGTATGGGTTTCCTAATGAGGAGTGGAAAGTCACTTTACCTGATGAAAATATTCCATCTGAGTTTCCCGAGCCTTCCCTGGGCATTAACTTTGCTAGGTCTGGAATGCAAAAAACAGATTGGCTGTCCTTAGTTGCCACTCATAGCGATTCATGGTTATTTGGCATTGCATTCTGGTATGGAGGTCAATATGGGTTTAACAAATCTGACAGGGAGCGCCTTTTCAGTATGATCAATGAACTGCCAACAATATTGGAAGTTGTTGATGCTGCGGAAGTTGTTACTGATGCTGCAAAGAAACAAGTTGAGGAGAAGTCTTCAGTTTCAAACCTCAGTGGCAGCAAATCCAAGTCCTACCTGATAGCGGCTCCAGAATCCCAGGTCAAGGAGCTGGAGGAGGAGGACGATGACGAAAATATATTATGTGAAGTATGCAGTATGCACTACGGACAAGACACTTTTTGGATTTTCTGCGATTTTTGTGAGCACTGGTATCATGGCAAGTGCGTGAAGGTTACGCCTGACATGGCCCATCTTATCAATGAATACAAGTGTTCATTTTGTCGGATAAAATTTGATTGA 729 0.4307 MDSRTQYNSYTVEDVFQDFKGRRAGLIKALTTDADDLYNQCDPDNENLCLYGFPNEEWKVTLPDENIPSEFPEPSLGINFARSGMQKTDWLSLVATHSDSWLFGIAFWYGGQYGFNKSDRERLFSMINELPTILEVVDAAEVVTDAAKKQVEEKSSVSNLSGSKSKSYLIAAPESQVKELEEEDDDENILCEVCSMHYGQDTFWIFCDFCEHWYHGKCVKVTPDMAHLINEYKCSFCRIKFD 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00698 242 ProSiteProfiles Zinc finger PHD-type profile. 188 240 IPR019787 -
Trre15g00698 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 238 IPR013083 -
Trre15g00698 242 SUPERFAMILY FYVE/PHD zinc finger 182 240 IPR011011 -
Trre15g00698 242 Pfam PHD-finger 191 239 IPR019787 -
Trre15g00698 242 ProSitePatterns Zinc finger PHD-type signature. 191 237 IPR019786 -
Trre15g00698 242 SMART PHD_3 190 238 IPR001965 -
Trre15g00698 242 Pfam Alfin 11 137 IPR021998 GO:0006355|GO:0042393
Trre15g00698 242 PANTHER CPG BINDING PROTEIN 8 239 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00698 Trre-Chr15 5228190 5232114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00698 7 240 Alfin-like Transcription Factor Family AT3G42790 51.046 2.77e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre15g00698 Alfin 5.4e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00698 K26274 - gmx:100170700 312.383