Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00694 ATGGCTTTTTCTTCACAATATAAAGAAATGTATGTCCTCCCTGGGATTATAATCATTGGATCCATTGTAATTGCTTTTATATTTTTCAGACTCACAATGCAAGGATGGTGCAACCTTATCAATCATGAACCTACCCTTCCTACAACAGTCATATCTTATGATGCCAAATTTTCTGCTTGCAAGAGTTTAGAGTCACATTCAATCACATTCATGTACAAGGATGGTGATGCTGAACAAGGCATAAACCAGACCGAATGTGTTATCTGTTTATCAGTCTTTCAAGAAGACGAAAGTGTTCGGAAGCTTCATAGTTGCAAGCATGTGTTTCATACATCTTGCATTGATAAGTGGCTTGGTTCTCATTTGGGATGTCCGCTATGTCGCTCTAAGATTGATCAAGTAATTTCCACAAACGGATCATTCGCAACTGATCGGATGATTGTGGACATTGTTGACTCCAGAATTTGA 468 0.3825 MAFSSQYKEMYVLPGIIIIGSIVIAFIFFRLTMQGWCNLINHEPTLPTTVISYDAKFSACKSLESHSITFMYKDGDAEQGINQTECVICLSVFQEDESVRKLHSCKHVFHTSCIDKWLGSHLGCPLCRSKIDQVISTNGSFATDRMIVDIVDSRI 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00694 155 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 16 132 IPR044675 -
Trre15g00694 155 ProSiteProfiles Zinc finger RING-type profile. 86 128 IPR001841 -
Trre15g00694 155 Pfam Ring finger domain 85 128 IPR001841 -
Trre15g00694 155 SMART ring_2 86 127 IPR001841 -
Trre15g00694 155 SUPERFAMILY RING/U-box 85 137 - -
Trre15g00694 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 135 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00694 Trre-Chr15 5181563 5182030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00694 66 131 C3H Transcription Factor Family AT1G72220 55.224 1.32e-17 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00694 - - mtr:25500542 231.491