Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00685 ATGAAGAACTCATGGCCATGTGGGACTTGTTCTGAATCTGATGTGCAAAAATCATCGATGTCCGAAAATCTGACCTTGAAAATGAGTGGTTTGCCACAACAATGTCATAAGAATTTTCTATTTCAAGACCAAGATTCTTCTTCTACACAATCAACTGGTCAATCTTATATGGAAGTCGGTTCGAGACAATTAGGTCCAATTTCGGTCAAGAATAGCAATTTTTCTGCTTGTTCAACACTTAGCAAAACTGCAGAGAGTCGCGATTTTACTTTGCCGCCGTCTCAACTGAATCACAACCAATCTCATGCTCATGTTGAATTCCCTCATGCTGAAGCATGCTTTAGTGGCCTACTAGCAGCTCCATATGGACCACAGAGTAATATTCATCATTCTCAGTTAGTAGGAACGGCTCCGGTTCGAATTCCTCTGCCTCTTGATCTTTGTGAGGAGCCAATATATGTGAATGCAAAGCAGTACCATGCTATTATGAGACGTAGACAGTATCGGGCAAAGCTAGAAGCACAGAATAAACTCATCAAAAATCGGAAACCATATCTACACGAGTCACGCCATCTGCATGCATTGAAGAGAGCTAGAGGTTCTGGTGGACGTTTTCTAAATACCAAAAAGCTCCAAGACCATGGCCTTAATGTTTCCGCCACTACTGAGCTGAGTCCGAGTGGAAACATGCCCGAATTAAAGGTACATAAAGTAGAAAACTATAGAGATGGTGCTTCCACAACCACCTGTTCTGATGTCACAAGTGCTTCTAATAGTGATGACGTGTTCCAACAACACGAATCCGACTTAAGATCATGTGGTTACCCTTCTCATATGCAGGGTTTCTCAACCGATACCGGTCTTATGTGA 870 0.423 MKNSWPCGTCSESDVQKSSMSENLTLKMSGLPQQCHKNFLFQDQDSSSTQSTGQSYMEVGSRQLGPISVKNSNFSACSTLSKTAESRDFTLPPSQLNHNQSHAHVEFPHAEACFSGLLAAPYGPQSNIHHSQLVGTAPVRIPLPLDLCEEPIYVNAKQYHAIMRRRQYRAKLEAQNKLIKNRKPYLHESRHLHALKRARGSGGRFLNTKKLQDHGLNVSATTELSPSGNMPELKVHKVENYRDGASTTTCSDVTSASNSDDVFQQHESDLRSCGYPSHMQGFSTDTGLM 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00685 289 MobiDBLite consensus disorder prediction 245 263 - -
Trre15g00685 289 ProSitePatterns NF-YA/HAP2 subunit signature. 153 173 IPR018362 GO:0003677|GO:0016602
Trre15g00685 289 ProSiteProfiles NF-YA/HAP2 family profile. 148 208 IPR001289 GO:0003700|GO:0006355
Trre15g00685 289 SMART cbf3 147 208 IPR001289 GO:0003700|GO:0006355
Trre15g00685 289 MobiDBLite consensus disorder prediction 245 277 - -
Trre15g00685 289 PRINTS CCAAT-binding transcription factor subunit B signature 182 205 IPR001289 GO:0003700|GO:0006355
Trre15g00685 289 PRINTS CCAAT-binding transcription factor subunit B signature 151 173 IPR001289 GO:0003700|GO:0006355
Trre15g00685 289 Gene3D - 148 209 - -
Trre15g00685 289 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 33 268 IPR001289 GO:0003700|GO:0006355
Trre15g00685 289 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 150 205 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00685 Trre-Chr15 5077544 5079574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00685 20 273 CCAAT-HAP2 Transcription Factor Family AT1G17590 44.161 4.40e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trre15g00685 CBFB_NFYA 6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00685 K08064 - gmx:100500765 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00685 15 5077544 5079574 Trre15g00685 15 5077544 5079574 ECH
Trre11g04581 11 57748196 57750459 Trre15g00685 15 5077544 5079574 PCT