Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00684 ATGGACTCGCGCACACAGTATAATCCTCGCACTGTCGAAGAAGTTTTCAGAGATTTCAAAGGTCGTCGTGCTGGTCTCATCAAAGCTCTCACCACTGATGTTGAAGATTTCTATAACCAATGTGATCCTGAGAAGGAGAATCTATGCCTTTACGGCTTTCCTAGTGAGCAGTGGGAAGTTAATTTACCTGCTGAAGAAGTTCCACCTGAGCTTCCTGAGCCTGTGCTCGGCATTAACTTTGCTAGGGATGGCATGCAAGATAAAGATTGGCTATCCTTGGTTGCTGTTCATAGTGATTCATGGTTAATTGCTATTGCCTACTACTTTGGAGCCAGATTTGGTTTTGACAAATCTGACAGGAAACGCCTTTTCAATATGATCAATGAACTGCCGTCAATATTTGAAGTTGTTACTGGTGCTGCAAAGAAACAAGTTAAGGAGAAGTCTTCAGTTTTAAACAACAGTGGCAGCAAATCCAAGTCCAACTCGAAAGCGCAACGAGCTCCAGAACCCCAGGTGAAGCAGACGAAGGCATTGGAACCCAAAGATGAGGAAGACGAACTGGAGGAGGAAGATGAAGATGAACACGGAGATACTTTATGCGGTGCATGTGGTGAGAATTATGGCACTGATGAATTCTGGATTTGCTGTGACATATGTGAGAAGTGGTTCCATGGAAAATGTGTGAAGATCACACCTGCTAGGGCTGAGCATATCAAGCAATACAAGTGTCCATCATGCAGTAGCAACAAGAGAGCCCGCCCTTGA 768 0.4453 MDSRTQYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQDKDWLSLVAVHSDSWLIAIAYYFGARFGFDKSDRKRLFNMINELPSIFEVVTGAAKKQVKEKSSVLNNSGSKSKSNSKAQRAPEPQVKQTKALEPKDEEDELEEEDEDEHGDTLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRARP 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00684 255 PANTHER CPG BINDING PROTEIN 8 254 IPR045104 GO:0006355|GO:0042393
Trre15g00684 255 FunFam PHD finger alfin-like protein 193 249 - -
Trre15g00684 255 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Trre15g00684 255 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Trre15g00684 255 MobiDBLite consensus disorder prediction 147 197 - -
Trre15g00684 255 MobiDBLite consensus disorder prediction 147 170 - -
Trre15g00684 255 SUPERFAMILY FYVE/PHD zinc finger 190 250 IPR011011 -
Trre15g00684 255 SMART PHD_3 200 248 IPR001965 -
Trre15g00684 255 Pfam PHD-finger 201 249 IPR019787 -
Trre15g00684 255 MobiDBLite consensus disorder prediction 183 197 - -
Trre15g00684 255 CDD PHD_AL_plant 200 250 IPR044104 -
Trre15g00684 255 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Trre15g00684 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 249 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00684 Trre-Chr15 5069945 5074912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00684 7 254 Alfin-like Transcription Factor Family AT3G42790 72.177 4.13e-121 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Trre15g00684 Alfin 8.2e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00684 K26274 - gmx:100170700 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00684 15 5069945 5074912 Trre11g04582 11 57754502 57757866 ECH
Trre15g00684 15 5069945 5074912 Trre15g00684 15 5069945 5074912 ECH
Trre11g04582 11 57754502 57757866 Trre15g00684 15 5069945 5074912 PCT