Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00682 ATGGACCTGAGTGATGTGGCTGAGGATGAATCAGAGGAAGAGATTCATGTTCCAGCTGAAATTGATTGGCAAATGCTTGATAAATCGAAGTTTTTCTTCCTTGGTGCTGCTTTGTTTTCTGGTGTTTCAGCAACATTGTATCCTGTTGTTGTGTTGAAAACTAGGCAACAAGTTGCTCAATCACAAGTTTCTTGTATTAAGACGGCGTTTTCGTTGATTAAAGGCGAGGGATTTAGAGCGTTGTATCGTGGTTTTGGTACTTCGTTGATGGGTACTATCCCTGCTAGAGCTTTATACATGGCTGCACTTGAGGTTACTAAGAGTAATGTTGGGACTGCTACTGTTGGTTTAGGTCTTGCTGAACCGACTGCAGCTGCAATTGCGAATGCAGTTGCTGGTTTGACTGCAGCTTTGGCGGCTCAACTTGTGTGGACACCTGTTGATGTTGTGAGCCAAAGGTTGATGGTTCAAGGTGGTTGTAATTCAAGTGATCCTAAGGGTTCATCTGTTAGGTATGCTAATGGGATTGATGCATTTAGGAAAATTGTGAGGACAGATGGTCCTAGGGGTTTGTATAGAGGTTTTGGGATATCGGTTGTGACGTATGCGCCTTCAAATGCAGTTTGGTGGGCTTCATATTCTGTTGCACAAAGGATGGTTTGGGGTGGAGTTGGATATTACTTGAGTAACAAGAAAGGTGGGGAGGGAAGCGAGAGAACTATCAATGGGGCTAATGTGTTGAGGCCGGATACGAAAACGGTTATGGCAGTTCAGGGAGTCAGTGCAGCAATGGCAGGAGGCATGTCTGCTTTGATTACTATGCCGTTGGATACAATTAAGACAAGGCTGCAGGTCTTGGATGGTGATGAGAATGGTCGTCGTGGACCAACGGTGATGCAGACAGTTAGAAGTTTGGTTAAGGAAGGTGGTTGGATGGCTTGTTATAGAGGATTGGGACCTAGATGGGCTTCAATGTCTGTGTCTGCAACAACAATGATCACAACCTATGAGTTCCTTAAACGGCTTTCCGCAAAGAATCAAGAGGTTTTGACATGA 1056 0.447 MDLSDVAEDESEEEIHVPAEIDWQMLDKSKFFFLGAALFSGVSATLYPVVVLKTRQQVAQSQVSCIKTAFSLIKGEGFRALYRGFGTSLMGTIPARALYMAALEVTKSNVGTATVGLGLAEPTAAAIANAVAGLTAALAAQLVWTPVDVVSQRLMVQGGCNSSDPKGSSVRYANGIDAFRKIVRTDGPRGLYRGFGISVVTYAPSNAVWWASYSVAQRMVWGGVGYYLSNKKGGEGSERTINGANVLRPDTKTVMAVQGVSAAMAGGMSALITMPLDTIKTRLQVLDGDENGRRGPTVMQTVRSLVKEGGWMACYRGLGPRWASMSVSATTMITTYEFLKRLSAKNQEVLT 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00682 351 PRINTS Mitochondrial carrier protein signature 32 45 IPR002067 GO:0055085
Trre15g00682 351 PRINTS Mitochondrial carrier protein signature 192 210 IPR002067 GO:0055085
Trre15g00682 351 PRINTS Mitochondrial carrier protein signature 262 284 IPR002067 GO:0055085
Trre15g00682 351 PRINTS Mitochondrial carrier protein signature 84 104 IPR002067 GO:0055085
Trre15g00682 351 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 10 348 - -
Trre15g00682 351 SUPERFAMILY Mitochondrial carrier 24 339 IPR023395 -
Trre15g00682 351 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 219 IPR018108 -
Trre15g00682 351 Pfam Mitochondrial carrier protein 257 346 IPR018108 -
Trre15g00682 351 Pfam Mitochondrial carrier protein 126 220 IPR018108 -
Trre15g00682 351 Pfam Mitochondrial carrier protein 38 109 IPR018108 -
Trre15g00682 351 Gene3D Mitochondrial carrier domain 31 349 IPR023395 -
Trre15g00682 351 ProSiteProfiles Solute carrier (Solcar) repeat profile. 27 109 IPR018108 -
Trre15g00682 351 ProSiteProfiles Solute carrier (Solcar) repeat profile. 253 342 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00682 Trre-Chr15 5061047 5062102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00682 7 348 Chloroplast and Mitochondria Gene Families AT1G72820 73.333 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00682 K15121 - gmx:100784616 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00682 15 5061047 5062102 Trre15g00682 15 5061047 5062102 ECH