LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g00673	ATGATGGTACAATCAGAAGTTGCTACCACCATTATTGCCGTTAATGCCGGCCGGAATAGCCAATACGCCGTGAAATGGGCCGTGGACTACCACCTAAAAAAGAATTGTAAATGTATCCTCATTCATGTTCGAACCAAACCCATCAGTCATTCGAATGATCATGTTGATGATGTTCCTAAAAATGGTCGTCCACCAACACAAGAAGAATTGCATCAATTCTTTCTTCCCTTCCGTGGATTTTGTGCTAGAAAAGGGATTGAGGCAAAGGAATTGGTCTTACATGATATTGATGTTCCTAGTGCCCTTACTGATTATGTTGTTGACAACTCTATCACCAATGTTGTTGTTGGTAGTTGTTCTTCTCCTTGGAGTTCTTTTATAAGGAGATTTAAAGAAGTAAATGTTGCATCTTCATTAGCAAAATCTTTACCAAAGTCATGCACATTACATGTTATATCAAGAGGAAAAGTACAAAAAATTCAACCAACAGGACCTCCTATTCCTAATCGTGATCAAACTAGTACTCAACCTCAAAATATTCAAGTCACACCAACTAGATCTATAAGAGACATAGTTACACTATTGCAAAATGTAAATAAGTTTATTGATCATAAGCCTGATTCTGGTGATCTAAACAGGAGTTCATCCTTAGATGCAAACAAATGTTGGGATCCATTACATGATATGAAGGATGGTATAATGACACCGCATATATCCAATGTTGTTGAAGAAAGCTATTCACCAAGAGGACCAAGATTTTCAATGGGAAGCTCTTCATCACACACTTCATCATCAATGGGAAGCACCTCATCACAAACTTCATCATACAAAAGTTCTCCTCCAAGTAGTAATGATAGTTTAGGGAGAATAAGCAATAATAATGATACAAATTGCCCATTTTATCCAAAACCACCGATAAGCATTGAGACAGAAATAAAGAAATTAAAACTAGAATTGAAGAAAGCATCAGAGCAATACGGTATAGTGTGCAAAGAAGCTGTTTTAGCAAAACTTAAGGCAAATGAGCTTGAAAAGTTTAGACAAGAAAAAGAGCGAAATTTTGAAAAAACAAGGATTGCCGAAGAGGCTGCATTGGTTTTAGCAGAAGTAGAGAGACAAAAAGCGAAGGCGGCTTTCGAATCTGCTGAAATGTCGCAGCGTCTAGCAGAAATGGAAACTCAAAAGAGAAAACTAGCAGAATTAAAAGCGAAATACGATGAAGAAGATAGGAGAAGAACACTACATGATGTTGTGTTTAATAATGTTGCATATAGAAGATATGATATTAAAGAAATTCAAGTTGCAACCAATAGTTTTGACAATGCTCTCAAAATTGGTGAAGGAGGGTATGGACCTGTTTTTAAAGCTGTACTTGATCACACTGTTGTTGCCATAAAGGTTCTTAGACCTGATTTAGCCCATGGAGAAAGACAATTTCAACAAGAGGTTCTTGTTTTAAGCACCATAAGACATCCCAACATGGTGCTCCTTCTAGGTGCATGCCCGGAGTATGGATGCCTTGTGTATGAACACATGGAAAATGGAAGTTTAGAAGATCGTCTATTCCGAAAAGACAACAGTCTACCAATTCCATGGAAAAATCGTTTCAAAATATCATCTGAAATTGCGACCGGCCTTCTTTTCCTTCACCAAAGAAAGCCTGAGCCACTAGTACACCGCGATTTGAAACCAGGAAACATTCTCTTAGACAAAAACTATGTTAGCAAGATCAGTGATGTTGGTTTGGCACGACTCGTTCCAGCTTCAGTATCTAACAAAACCACTCAATATCACATGACAGGTGCTGCTGGAACATTTTGTTACATTGATCCTGAGTATCAACAAACTGGGATGTTGGGTGTGAAATCAGATATATATTCATTAGGTGTAGTGTTACTGCAAATTATTGCTGCAAAGCCTCCAATGGGTTTGTCTCATTTGGTTGAAGAGGCTATCAAAAATGGGGAATTCATAGATGTACTTGACTCAAGTGTGCCAGATTGTCCTATTGAAGAGGCTTTATCATTTGCTAAGTTGGCCTTAAAGTGTTGTGAGTTGAGAAAACGTGACAGACCTGATCTTGGTACTGTTATTTTGCCAGAGCTGAATAGAATATCACAAATTTGGGATTGTGATGAAAATTAA	2145	0.3772	MMVQSEVATTIIAVNAGRNSQYAVKWAVDYHLKKNCKCILIHVRTKPISHSNDHVDDVPKNGRPPTQEELHQFFLPFRGFCARKGIEAKELVLHDIDVPSALTDYVVDNSITNVVVGSCSSPWSSFIRRFKEVNVASSLAKSLPKSCTLHVISRGKVQKIQPTGPPIPNRDQTSTQPQNIQVTPTRSIRDIVTLLQNVNKFIDHKPDSGDLNRSSSLDANKCWDPLHDMKDGIMTPHISNVVEESYSPRGPRFSMGSSSSHTSSSMGSTSSQTSSYKSSPPSSNDSLGRISNNNDTNCPFYPKPPISIETEIKKLKLELKKASEQYGIVCKEAVLAKLKANELEKFRQEKERNFEKTRIAEEAALVLAEVERQKAKAAFESAEMSQRLAEMETQKRKLAELKAKYDEEDRRRTLHDVVFNNVAYRRYDIKEIQVATNSFDNALKIGEGGYGPVFKAVLDHTVVAIKVLRPDLAHGERQFQQEVLVLSTIRHPNMVLLLGACPEYGCLVYEHMENGSLEDRLFRKDNSLPIPWKNRFKISSEIATGLLFLHQRKPEPLVHRDLKPGNILLDKNYVSKISDVGLARLVPASVSNKTTQYHMTGAAGTFCYIDPEYQQTGMLGVKSDIYSLGVVLLQIIAAKPPMGLSHLVEEAIKNGEFIDVLDSSVPDCPIEEALSFAKLALKCCELRKRDRPDLGTVILPELNRISQIWDCDEN	714

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g00673	714	MobiDBLite	consensus disorder prediction	251	300	-	-
	Trre15g00673	714	Coils	Coil	381	411	-	-
	Trre15g00673	714	Gene3D	Phosphorylase Kinase; domain 1	418	511	-	-
	Trre15g00673	714	Gene3D	Transferase(Phosphotransferase) domain 1	512	711	-	-
	Trre15g00673	714	SUPERFAMILY	Protein kinase-like (PK-like)	416	697	IPR011009	-
	Trre15g00673	714	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	11	121	-	-
	Trre15g00673	714	MobiDBLite	consensus disorder prediction	165	184	-	-
	Trre15g00673	714	Pfam	Protein kinase domain	443	693	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g00673	714	Gene3D	HUPs	9	151	IPR014729	-
	Trre15g00673	714	ProSiteProfiles	Protein kinase domain profile.	439	702	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g00673	714	SMART	serkin_6	439	702	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g00673	714	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	411	511	-	-
	Trre15g00673	714	PANTHER	OS02G0152300 PROTEIN	11	707	-	-
	Trre15g00673	714	FunFam	Os07g0541700 protein	512	602	-	-
	Trre15g00673	714	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	557	569	IPR008271	GO:0004672\|GO:0006468
	Trre15g00673	714	MobiDBLite	consensus disorder prediction	158	184	-	-
	Trre15g00673	714	CDD	STK_N	9	155	-	-
	Trre15g00673	714	MobiDBLite	consensus disorder prediction	244	303	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g00673	Trre-Chr15	4928166	4933200	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g00673	8	708	Receptor kinase-like Gene Family	AT1G17540	45.543	0.0	604

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Trre15g00673		Pkinase	5.5e-38	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g00673	-		-	gmx:100799611	880.167