Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00650 ATGGGGAATCAAAAGATTAAATGGACCTCGGAAGAAGAAGACGCACTTGTTGCAGGAATCAAAAAACACGGTGCTGGAAAATGGAAAACCATTCTTCTTGATCCTCAGTTTGCTCCTTTACTCACTTCTCGTTCCAACATCGACCTCAAGGATAAATGGCGAAATATGAATGTTTATGTCACTGCTCAAGGTGTTAGAACTCCTAAGCCCAAAGTTGCAGCTACTCCTTCTTCTGATGTTGTTATCAATGAACAAGATGTTAACACCCCTCCAAGGTACAATGCCATGGTTTTTGAAGCTCTATCTACATTGAAGGATACTAATGGGTCTGACCTAAACGCCATTGCTAGTTTCATCGAGCAAAAGCATCAGGTTCCTCAAAATTTCAGAAGGACGCTGAGTTCAAGGTTGAGGACCCTTGTGAATCAAGAGAAACTTGAAAAGGTACAAAATTGTTATAAGATAAAAAAAGAATCCTCATTGGTGACAAAATCACCTTCATCAAAACAAAAGGCGGTTAGGCCACAACAGCAATCATCAGCCTCTGATGATATGCTGCATTTCGCAGCTGATACTGCAGCATACATAGTTGCTGAGGCTGAAAACAAATCATATCTGGCAGTTGAGGCAGTCAAGGAGACTGAAAGAATCTCACGCTTGGCCGAAGAAAATGATGCAATGTTGTTGCTAGCAGAGCAACTTTATGAACAATGTTTGCGCGGTGAAACTATCAAGTGGGCTTAA 744 0.4126 MGNQKIKWTSEEEDALVAGIKKHGAGKWKTILLDPQFAPLLTSRSNIDLKDKWRNMNVYVTAQGVRTPKPKVAATPSSDVVINEQDVNTPPRYNAMVFEALSTLKDTNGSDLNAIASFIEQKHQVPQNFRRTLSSRLRTLVNQEKLEKVQNCYKIKKESSLVTKSPSSKQKAVRPQQQSSASDDMLHFAADTAAYIVAEAENKSYLAVEAVKETERISRLAEENDAMLLLAEQLYEQCLRGETIKWA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00650 247 SUPERFAMILY Homeodomain-like 3 59 IPR009057 -
Trre15g00650 247 Pfam Myb-like DNA-binding domain 7 56 IPR001005 -
Trre15g00650 247 CDD H15 89 172 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre15g00650 247 Pfam linker histone H1 and H5 family 91 150 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre15g00650 247 SUPERFAMILY "Winged helix" DNA-binding domain 89 165 IPR036390 -
Trre15g00650 247 MobiDBLite consensus disorder prediction 163 183 - -
Trre15g00650 247 CDD SANT_TRF 6 57 - -
Trre15g00650 247 SMART sant 4 59 IPR001005 -
Trre15g00650 247 SMART h15plus2 87 152 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre15g00650 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Trre15g00650 247 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Trre15g00650 247 PANTHER SINGLE MYB HISTONE 4 1 244 IPR044597 GO:0003691
Trre15g00650 247 FunFam Telomere repeat-binding factor 1 2 58 - -
Trre15g00650 247 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 89 157 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre15g00650 247 Gene3D - 2 58 - -
Trre15g00650 247 Gene3D - 86 174 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00650 Trre-Chr15 4749200 4753396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00650 1 244 Single Myb Histone (SMH) Gene Family AT1G72740 45.683 8.31e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre15g00650 Linker_histone 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00650 K09422 - gmx:780537 295.819