Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00648 ATGTCCTCATCGTCGTCCACTAATCTTTCAGGTTTTGGGAAGCCGTCTTCAATCCAGCAAAGAGGAATTGTTCCTTTCTGCAAAGGTTTGGATGTCATTCTACAGGCTCCGTCTGGAACAGGGAAGTCAGCAACATTCTGCATTGGAATTTTGCAGAAGCTTGATTATGGATTGGTTCAGTGTCAGGCTTTGGTTTTGGCACCAACCAGTGAGCTAGCTTTACATATTCAGAAGGTTATGCGAGATCTTGGTAAATTCCTTGGTGTTAAGGTTCATGCTTGTTTTGGCGGGACAAGTGTTCGTAGGGACCAGCGCATTCTCCAAAATGGTGTTCACACTGTTGTTGGTACTCCGGGGCGTGTGCATGATATGCTGCAGAGGGGGGCTCTTCGCCCCGATGGCATAAAGATGTTTGTTTTGGATGACCTTGATGAAATGCTTTCACATGGTTTCAAGGATAAGATCCATTTAATCTTCGAGCTACTGCCCATCGAAATTCAGGTTGGAGTAATCTCTGCTGCAATGCCCCCTGAAGCCCTTGAAATTACTAGGAAGTTCATGAAAAAGCCAGTGATAATTCAGGAAAAGCGTGATGAGCCAGTGAGAGTTCAGGAAAAGCGCGGTGAACCAGTGAGAATTCAGGAAAAGCCTGATGAGCCAGTGAAAGTTCAGGAAAAGCGTGACGAACCAGTGCGAGTTCAGGAAAAGCGCAGTGAACCAGTGAGAATTCAGGAAAAGCGCGATGAGCCGACCCTTGAGGGTATCAAGCAGTTTTATGTCAATATTGAAAAGGAAGAGTGGAAGCTAGAGACATTAAGCGACTTCTATGAGACTCTATCCACCACTCGGTGTATCGTTTTTGTGAATACCAGGCGCAAAATGGACTGGCTCACTGACAAGATGCAAAGCAAAAACCATACAGTGTCGGCCATCCATGGTGACATGGACCAGAACACTGGGGATATCGTCGTGCGTGAGTTCCAGTCTGGCTCTCCTCAAGTTCTCATTACCACCGACCCCTTGGTCCCTGGTATCGATGTGCAGGAAGTGTCTCTGGTCGTAAACTATGATCTCCCAACTCTACCTGAAAACTATGTCCACCGTATGGGTCGTGGTGTTCGATTTGGAAGAAAAGGTGTTGCTATAAACTTTGTGACATTGGATGATGCTAGAATGCTTGCTGATATTCAGAAATTCTACAATGTGAGTATGGAGGAGGTGCCATCAAATGTTGCTGATCTACTCTCATGA 1251 0.4596 MSSSSSTNLSGFGKPSSIQQRGIVPFCKGLDVILQAPSGTGKSATFCIGILQKLDYGLVQCQALVLAPTSELALHIQKVMRDLGKFLGVKVHACFGGTSVRRDQRILQNGVHTVVGTPGRVHDMLQRGALRPDGIKMFVLDDLDEMLSHGFKDKIHLIFELLPIEIQVGVISAAMPPEALEITRKFMKKPVIIQEKRDEPVRVQEKRGEPVRIQEKPDEPVKVQEKRDEPVRVQEKRSEPVRIQEKRDEPTLEGIKQFYVNIEKEEWKLETLSDFYETLSTTRCIVFVNTRRKMDWLTDKMQSKNHTVSAIHGDMDQNTGDIVVREFQSGSPQVLITTDPLVPGIDVQEVSLVVNYDLPTLPENYVHRMGRGVRFGRKGVAINFVTLDDARMLADIQKFYNVSMEEVPSNVADLLS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00648 416 Pfam Helicase conserved C-terminal domain 268 376 IPR001650 -
Trre15g00648 416 Gene3D - 247 415 IPR027417 -
Trre15g00648 416 CDD SF2_C_DEAD 255 385 - -
Trre15g00648 416 FunFam Eukaryotic initiation factor 4A-III 249 415 - -
Trre15g00648 416 SMART ultradead3 11 204 IPR014001 -
Trre15g00648 416 Pfam DEAD/DEAH box helicase 17 178 IPR011545 GO:0003676|GO:0005524
Trre15g00648 416 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 254 415 IPR001650 -
Trre15g00648 416 Gene3D - 3 201 IPR027417 -
Trre15g00648 416 MobiDBLite consensus disorder prediction 199 240 - -
Trre15g00648 416 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 7 400 - -
Trre15g00648 416 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 23 193 IPR014001 -
Trre15g00648 416 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 396 IPR027417 -
Trre15g00648 416 SMART helicmild6 295 376 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00648 Trre-Chr15 4740455 4742957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00648 11 415 Eukaryotic Initiation Factors Gene Family AT1G72730 65.432 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00648 K03257 - gmx:100777628 541.191