Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00646 ATGGAACCTCGAATTGGGAATAAGTTCCGTCTTGGTCGGAAAATTGGTAGCGGATCTTTTGGAGAGATCTATCTCGGTACCAATATTCAAACAAATGAAGAGGTTGCGGTTAAGCTTGAAAATGTCAAAACCAAGCACCCACAATTGTTGTATGAAGCAAAGCTGTATAAACTACTGCAAGGAGGAACTGGGATTCCGAATGTGAGATGGTCCGGTGTCGAAGGAGAGTACAATGTCCTTGTGATGGATTTACTTGGCCCTAGTCTTGAGGATTTGTTCAATTTCTGTAATAGGAAGTTGTCCCTCAAAACTGTTCTCATGCTTGCTGATCAAATGATAAATCGAGTGGAATTTTTTCATTCCAAGTCATTTTTACATCGGGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTGTACGTCATTGACTTTGGTCTTGCTAAGAAATTCAGAGATAGTACAAATCGGCATATTCCGTACAGAGAGAATAAGAATCTGACGGGAACTGCTAGGTATGCTAGTATGAATACACATCTTGGAATTGAGCAAAGTCGCAGGGATGATTTAGAGTCACTTGGATATGTTCTTATGTATTTCTTAAGAGGAAGTCTGCCTTGGCAGGGATTGAAAGCCGGTACTAAGAAGCAGAAGTATGAGAGAATCAGTGAGAAAAAAGTTTCTACTTCTATTGAGTCTCTCTGCATTGGGTATCCCACAGAATTTGCATCATACTTCCATTATTGTCGATCACTGAGGTTTGATGATAAACCTGATTATGCTTATCTGAAAAGACTTTTGCGTGACCTTTTCATCCGTGAAGGATTCCAGTTTGATTATGTCTTCGATTGGACCATTTTGAAATATCAGCAATCTCAAGTTGCCAACCCTCCTTCCCGTGGTATTGGTCTTGCTGCTGGACCAAGTTCCGGTCTGCCGCTAACTTCTGCAAATGCTGATGGACAGTCAGGTGGCAAAGATGTTAGGCATACTGGGTGGTCTTCATCTGATCCCACTCGTAGGAGAACTTCTGGACCTATTGCCAATGATGGAATCTTATCTAGAGAAAAAGCACCGCTTACAAATGACTTATCTGGATCTAAAGATGCTATGTTGTCAAGTTCGAATTTCTTTCGGTCAAGTGGATCTGCAAGGCGAGGTGCTATCTTAAGCGGCCGTGATGCAGTTGTTGGCAGTGAGACTGAGCCCTCCTCTCGTCCTCTCACTACGGATTCAAGTCAGGGCGCACTCCGTAACAGCTCTGGTGCTCAGAGAAGTTCACATATCATGTCATCTGAGCACAACCGAGTATCATCTGGAAGAAACACATCAAACATAAAGAATTTGGATTCAACTCTTAGAGGTATTGAGAGTCTGCATATTAACGATGAGAGGGCACAGTATTAG 1422 0.4262 MEPRIGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAVKLENVKTKHPQLLYEAKLYKLLQGGTGIPNVRWSGVEGEYNVLVMDLLGPSLEDLFNFCNRKLSLKTVLMLADQMINRVEFFHSKSFLHRDIKPDNFLMGLGRRANQVYVIDFGLAKKFRDSTNRHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYERISEKKVSTSIESLCIGYPTEFASYFHYCRSLRFDDKPDYAYLKRLLRDLFIREGFQFDYVFDWTILKYQQSQVANPPSRGIGLAAGPSSGLPLTSANADGQSGGKDVRHTGWSSSDPTRRRTSGPIANDGILSREKAPLTNDLSGSKDAMLSSSNFFRSSGSARRGAILSGRDAVVGSETEPSSRPLTTDSSQGALRNSSGAQRSSHIMSSEHNRVSSGRNTSNIKNLDSTLRGIESLHINDERAQY 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00646 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Trre15g00646 473 MobiDBLite consensus disorder prediction 318 372 - -
Trre15g00646 473 SMART serkin_6 9 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00646 473 MobiDBLite consensus disorder prediction 318 348 - -
Trre15g00646 473 Pfam Protein kinase domain 10 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00646 473 FunFam Casein kinase I isoform delta-like 1 307 - -
Trre15g00646 473 PANTHER CASEIN KINASE-RELATED 13 436 - -
Trre15g00646 473 FunFam Putative Casein kinase I 1 85 - -
Trre15g00646 473 SUPERFAMILY Protein kinase-like (PK-like) 5 289 IPR011009 -
Trre15g00646 473 Gene3D Transferase(Phosphotransferase) domain 1 1 306 - -
Trre15g00646 473 CDD STKc_CK1_delta_epsilon 8 281 - -
Trre15g00646 473 MobiDBLite consensus disorder prediction 397 451 - -
Trre15g00646 473 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00646 473 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Trre15g00646 473 MobiDBLite consensus disorder prediction 407 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00646 Trre-Chr15 4731064 4735784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00646 7 222 EF-hand Containing Proteins AT2G17890 26.339 2.73e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trre15g00646 Pkinase 1.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00646 K02218 - gmx:100778165 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04594 11 57826888 57831779 Trre15g00646 15 4731064 4735784 PCT