Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00623 ATGGGATCATGCCTCTCAGGAGCTTCTTCAGCTCCTTCTCCTCCTATCACTAATTATTATTATGAATCTCCATCTAAATTTTATAACAATACACGAGACGTGAATCCAGAAATGCGGTTGCATCGAATTCCTGGAAGAATATTTTTGAATGGTTCATCACCTTTTGCATCCTTGTTTTGTAAGCAAGGTAGCAAAGGCATCAACCAGGATGCAATGCTTCTTTGGGAGAATTTTGGTTCCATGGAGGACTGCGTATTTTGTGGTGTATTTGACGGGCATGGACAATATGGACATGTGGTCGCCAAGAAAGTTAGAGATGCTTTCCCTTTAAAGATAATGAATGAATGGAATTCGCGTTGCCGTTATGATGATGATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATATCAACAATAATAATAAAAACAATAACCATTTCAAGATAATGAGAGAATCCTTTGTGAGAGCATCTAAATCCATGGACAGAGAACTCAAACAACAACATACCATGGATTCTTATGGAAGTGGGACAACCGCTGGACATGAACTAGTTATTGCAAATGTTGGAGACTCGAGAGCGGTTTTAGGTACCCGAGATCCGGATGGTTCTCTTATTGCACTTCAACTGACAACCGACCTGAAGCCAAATCTTCCAAGGGAAGCAGAGAGGATAATGATGTGTAAAGGAAGGGTGTTTGCCCTTGAGAATGAAGGAATTGCTCGACTTTGGCTTCCCAATGTTGATTCACCTGGGCTAGCTATGGCACGCGCTTTTGGTGATTTTTGTCTCAAGGACTTTGGACTCATATCTATTCCAGAAGTCTCCTATCGTCGCCTCACTGACCAGGATCAATTTGTTGTCTTAGCCACAGATGGTATTTGGGATGTTATGTCCAACGAACAAGTTGTGAGTATCGTTGCATCTGCTCCGCGTTCTTCTGCTGCTAAACTACTAGTTGAGGCAGCTGTTCAAGCATGGAGGGCAAAACTTCCATCTTCGAAGCCTGATGATTGCTCTGCAATATGTCTCTTCTTTCATCCACATGGAAATGCTACACCTAACACTAATACTAGTATCGCTACGGGCGCTAGAGAATCGCCCTGCCAAACTAAACAAAAGCACCAATAG 1179 0.3953 MGSCLSGASSAPSPPITNYYYESPSKFYNNTRDVNPEMRLHRIPGRIFLNGSSPFASLFCKQGSKGINQDAMLLWENFGSMEDCVFCGVFDGHGQYGHVVAKKVRDAFPLKIMNEWNSRCRYDDDNNNNNNNNNNNNNNNNNNNNNNNNNNNINNNNKNNNHFKIMRESFVRASKSMDRELKQQHTMDSYGSGTTAGHELVIANVGDSRAVLGTRDPDGSLIALQLTTDLKPNLPREAERIMMCKGRVFALENEGIARLWLPNVDSPGLAMARAFGDFCLKDFGLISIPEVSYRRLTDQDQFVVLATDGIWDVMSNEQVVSIVASAPRSSAAKLLVEAAVQAWRAKLPSSKPDDCSAICLFFHPHGNATPNTNTSIATGARESPCQTKQKHQ 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00623 392 SUPERFAMILY PP2C-like 52 365 IPR036457 -
Trre15g00623 392 SMART PP2C_4 46 360 IPR001932 -
Trre15g00623 392 MobiDBLite consensus disorder prediction 372 392 - -
Trre15g00623 392 Gene3D - 52 363 IPR036457 -
Trre15g00623 392 PANTHER PROTEIN PHOSPHATASE 51 360 IPR015655 GO:0004722|GO:0006470
Trre15g00623 392 CDD PP2Cc 55 362 IPR001932 -
Trre15g00623 392 MobiDBLite consensus disorder prediction 123 160 - -
Trre15g00623 392 Pfam Protein phosphatase 2C 139 329 IPR001932 -
Trre15g00623 392 ProSiteProfiles PPM-type phosphatase domain profile. 55 362 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00623 Trre-Chr15 4521861 4523501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00623 1 377 PP2C-type Phosphatase Gene Family AT3G02750 46.501 2.65e-121 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00623 - - tpra:123883030 633.639