Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00622 ATGGTAAAAGGTTTTATGTTTCAACAACAACAACAACAAGAACAACCTCAGCAACAACAAGTGATGGAAGAAAACATGTCAAATTTAACTTCTGCATCTGGTGAAGCTAGTGAAATTGGTACTAGTTACTCTCAAGAACAATACTTAGCTCCTCCAACACAAACAGTGAAGAAAAAAAGAAATCTTCCTGGTAACCCAGACCCAGAAGCTGAGGTAATAGCTTTATCACCAAAGAGTTTACTAGCAAAAAACAGATTCATATGTGAGATCTGTAACAAAGGTTTTCAAAGAGATCAAAATCTTCAACTTCATAGAAGAGGACATAACTTACCATGGAAGTTGAAACAAAGAACAAGTAAAGAAATTAGAAAGAAAGTTTATGTATGTCCGGAAACAACTTGTGTTCATCATGATCCATCAAGAGCATTAGGAGATTTAACTGGAATCAAAAAGCACTTTTGCAGAAAACATGGTGAGAAAAAGTGGAAATGTGAAAAATGTTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCAAAAACATGTGGCACCAGAGAGTATAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTTATAACACATAGAGCATTTTGTGATGCATTAGCAGAGGAGAGTGCAAGAGCTATGACAAACATTTCAATTCCAATTTTACCCTCACATTCACAACAAGAACAACCTTCATCATCATCTTCTCATCACATGATTAATCTACAAACCCAATTCAATAATCCACAATCACAAGAGCTTAATCATGTTTTTCAATTAAAAAAAGAACAACAAAATCAAAATCAAAGTTTCAATCTTTCAGAAATTCCACCTTGGCTTGGCCCACCTAATAATGTTGATAATAATATTAATCTATCATCAACATCAATTTTCTCTCAAAATAATAATCATTTTTCATCACATCATCAAGAAAACCCTAACCCTAGTCTTGTTCATGTTTCTGGGCCCACACTCCCTTCTTACCAAACAGTACCTTCCCCACACATGTCAGCTACTGCATTATTGCAGAAAGCAGCTCAAATGGGTGCTACAATGAACAGAAATGGTTCTGCTTCTTCACCAGCTATGAATATTAGGACCCACCAACTTGATTCTGATTCTCTCAACAATGTCTCTGGTAATTTTGGTTTGAATTTGTTGTCATCACCATCACATGAACAAAACCAAAACACAACAAACAATGCTACAACATCATCAACAACATGTTTTAATATTCATGATGTTATGTTTTCAACTTCTTCATCTCCTTCTGGATTTGAAGGAGCACATTTTGATGAAATGTTTGGTGGCATTATGAATTCAAAGAAAGATAAAAAAAAAGCCGTGGATGAAGGCGGTGGAGTCGGCGGTGGAAATGAAGGGTTGACAAGAGATTTCTTGGGACTTAGGCCATTGTCTCATAGTGATATTTTAAGTATTGCAGGGATTGGAAATTGCATGAATGATGAATCTCAAAAGCCATCATGGCAAGGTTAG 1518 0.359 MVKGFMFQQQQQQEQPQQQQVMEENMSNLTSASGEASEIGTSYSQEQYLAPPTQTVKKKRNLPGNPDPEAEVIALSPKSLLAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPETTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAMTNISIPILPSHSQQEQPSSSSSHHMINLQTQFNNPQSQELNHVFQLKKEQQNQNQSFNLSEIPPWLGPPNNVDNNINLSSTSIFSQNNNHFSSHHQENPNPSLVHVSGPTLPSYQTVPSPHMSATALLQKAAQMGATMNRNGSASSPAMNIRTHQLDSDSLNNVSGNFGLNLLSSPSHEQNQNTTNNATTSSTTCFNIHDVMFSTSSSPSGFEGAHFDEMFGGIMNSKKDKKKAVDEGGGVGGGNEGLTRDFLGLRPLSHSDILSIAGIGNCMNDESQKPSWQG 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00622 505 MobiDBLite consensus disorder prediction 270 291 - -
Trre15g00622 505 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 483 IPR031140 -
Trre15g00622 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Trre15g00622 505 FunFam protein indeterminate-domain 5, chloroplastic-like 140 219 - -
Trre15g00622 505 Gene3D Classic Zinc Finger 155 221 - -
Trre15g00622 505 FunFam protein indeterminate-domain 12-like 65 133 - -
Trre15g00622 505 Pfam Zinc-finger double-stranded RNA-binding 86 108 IPR022755 -
Trre15g00622 505 MobiDBLite consensus disorder prediction 1 70 - -
Trre15g00622 505 SMART c2h2final6 86 108 IPR013087 -
Trre15g00622 505 SMART c2h2final6 127 157 IPR013087 -
Trre15g00622 505 SMART c2h2final6 162 182 IPR013087 -
Trre15g00622 505 SUPERFAMILY beta-beta-alpha zinc fingers 85 182 IPR036236 -
Trre15g00622 505 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Trre15g00622 505 Gene3D Classic Zinc Finger 66 136 - -
Trre15g00622 505 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00622 Trre-Chr15 4515474 4518091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00622 26 505 IDZ Gene Family AT3G13810 47.593 1.27e-141 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre15g00622 zf-C2H2_jaz 7.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00622 K25870 - qsu:111995117 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04623 11 57980767 57983178 Trre15g00622 15 4515474 4518091 PCT