Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre15g00622 | ATGGTAAAAGGTTTTATGTTTCAACAACAACAACAACAAGAACAACCTCAGCAACAACAAGTGATGGAAGAAAACATGTCAAATTTAACTTCTGCATCTGGTGAAGCTAGTGAAATTGGTACTAGTTACTCTCAAGAACAATACTTAGCTCCTCCAACACAAACAGTGAAGAAAAAAAGAAATCTTCCTGGTAACCCAGACCCAGAAGCTGAGGTAATAGCTTTATCACCAAAGAGTTTACTAGCAAAAAACAGATTCATATGTGAGATCTGTAACAAAGGTTTTCAAAGAGATCAAAATCTTCAACTTCATAGAAGAGGACATAACTTACCATGGAAGTTGAAACAAAGAACAAGTAAAGAAATTAGAAAGAAAGTTTATGTATGTCCGGAAACAACTTGTGTTCATCATGATCCATCAAGAGCATTAGGAGATTTAACTGGAATCAAAAAGCACTTTTGCAGAAAACATGGTGAGAAAAAGTGGAAATGTGAAAAATGTTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCAAAAACATGTGGCACCAGAGAGTATAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTTATAACACATAGAGCATTTTGTGATGCATTAGCAGAGGAGAGTGCAAGAGCTATGACAAACATTTCAATTCCAATTTTACCCTCACATTCACAACAAGAACAACCTTCATCATCATCTTCTCATCACATGATTAATCTACAAACCCAATTCAATAATCCACAATCACAAGAGCTTAATCATGTTTTTCAATTAAAAAAAGAACAACAAAATCAAAATCAAAGTTTCAATCTTTCAGAAATTCCACCTTGGCTTGGCCCACCTAATAATGTTGATAATAATATTAATCTATCATCAACATCAATTTTCTCTCAAAATAATAATCATTTTTCATCACATCATCAAGAAAACCCTAACCCTAGTCTTGTTCATGTTTCTGGGCCCACACTCCCTTCTTACCAAACAGTACCTTCCCCACACATGTCAGCTACTGCATTATTGCAGAAAGCAGCTCAAATGGGTGCTACAATGAACAGAAATGGTTCTGCTTCTTCACCAGCTATGAATATTAGGACCCACCAACTTGATTCTGATTCTCTCAACAATGTCTCTGGTAATTTTGGTTTGAATTTGTTGTCATCACCATCACATGAACAAAACCAAAACACAACAAACAATGCTACAACATCATCAACAACATGTTTTAATATTCATGATGTTATGTTTTCAACTTCTTCATCTCCTTCTGGATTTGAAGGAGCACATTTTGATGAAATGTTTGGTGGCATTATGAATTCAAAGAAAGATAAAAAAAAAGCCGTGGATGAAGGCGGTGGAGTCGGCGGTGGAAATGAAGGGTTGACAAGAGATTTCTTGGGACTTAGGCCATTGTCTCATAGTGATATTTTAAGTATTGCAGGGATTGGAAATTGCATGAATGATGAATCTCAAAAGCCATCATGGCAAGGTTAG | 1518 | 0.359 | MVKGFMFQQQQQQEQPQQQQVMEENMSNLTSASGEASEIGTSYSQEQYLAPPTQTVKKKRNLPGNPDPEAEVIALSPKSLLAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPETTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAMTNISIPILPSHSQQEQPSSSSSHHMINLQTQFNNPQSQELNHVFQLKKEQQNQNQSFNLSEIPPWLGPPNNVDNNINLSSTSIFSQNNNHFSSHHQENPNPSLVHVSGPTLPSYQTVPSPHMSATALLQKAAQMGATMNRNGSASSPAMNIRTHQLDSDSLNNVSGNFGLNLLSSPSHEQNQNTTNNATTSSTTCFNIHDVMFSTSSSPSGFEGAHFDEMFGGIMNSKKDKKKAVDEGGGVGGGNEGLTRDFLGLRPLSHSDILSIAGIGNCMNDESQKPSWQG | 505 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre15g00622 | 505 | MobiDBLite | consensus disorder prediction | 270 | 291 | - | - | |
Trre15g00622 | 505 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 25 | 483 | IPR031140 | - | |
Trre15g00622 | 505 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 86 | 108 | IPR013087 | - | |
Trre15g00622 | 505 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 140 | 219 | - | - | |
Trre15g00622 | 505 | Gene3D | Classic Zinc Finger | 155 | 221 | - | - | |
Trre15g00622 | 505 | FunFam | protein indeterminate-domain 12-like | 65 | 133 | - | - | |
Trre15g00622 | 505 | Pfam | Zinc-finger double-stranded RNA-binding | 86 | 108 | IPR022755 | - | |
Trre15g00622 | 505 | MobiDBLite | consensus disorder prediction | 1 | 70 | - | - | |
Trre15g00622 | 505 | SMART | c2h2final6 | 86 | 108 | IPR013087 | - | |
Trre15g00622 | 505 | SMART | c2h2final6 | 127 | 157 | IPR013087 | - | |
Trre15g00622 | 505 | SMART | c2h2final6 | 162 | 182 | IPR013087 | - | |
Trre15g00622 | 505 | SUPERFAMILY | beta-beta-alpha zinc fingers | 85 | 182 | IPR036236 | - | |
Trre15g00622 | 505 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 88 | 108 | IPR013087 | - | |
Trre15g00622 | 505 | Gene3D | Classic Zinc Finger | 66 | 136 | - | - | |
Trre15g00622 | 505 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre15g00622 | Trre-Chr15 | 4515474 | 4518091 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre15g00622 | 26 | 505 | IDZ Gene Family | AT3G13810 | 47.593 | 1.27e-141 | 415 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Trre15g00622 | zf-C2H2_jaz | 7.4e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre15g00622 | K25870 | - | qsu:111995117 | 583.178 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre11g04623 | 11 | 57980767 | 57983178 | Trre15g00622 | 15 | 4515474 | 4518091 | PCT |