Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00620 ATGAGAACAATAATTTTTGAATCTGATATGCGGGCCAATGATCCTGTCGGCGGTTGTTATAAATATATTCAAAATCTTCAAGCTCAAATTGAATATTGTAAAACAGAACTTGATCTTGTTCTTCAACAACTCGCGGTTTTTCGAGCACAATCTCATGATCATCATCATCAACAACAACAACAACAACAAGTAGTTAATTATGGTGATCAAGTTATTATGAATTCAGATTCATTATTAGGTTATTATAATCCATCTGGATCTGTTGTTTCGGCTACCGCACCGGCTCATTATAATTACAATGTTCAACAAGTGGTGACACCATTACAAGAACATGAACAAGAACAATACCTTATGATGCAAGAAAGTAATAGTAGTAGTATTAATAGTACTACTCCTTTGCAACAACATGTTAATAATTGGGGGGATATGCAAAACTCTATTTCTTTATCATCTTTGTCATTGCATGGACAAAGTAGTAATGCTAGTGATGAGTATGATCATAAGCCAACTCTTGATATACCTAGTGACGAAAGAAATGGATTAGGATTCGAATCCGGAGAAATACTTCACCACAGTGATGAAACAGTTTTGTTTAAGATAGATGAAGGATTAATTAAAGCAGAGGGTGGCTACATTCAAGAAACACTAGCTCAAGAACAAGATCATGATTTAAAAGGAGCAGCAACATTGTTTACTCTAACAAATTGTACTAGTTGA 717 0.3417 MRTIIFESDMRANDPVGGCYKYIQNLQAQIEYCKTELDLVLQQLAVFRAQSHDHHHQQQQQQQVVNYGDQVIMNSDSLLGYYNPSGSVVSATAPAHYNYNVQQVVTPLQEHEQEQYLMMQESNSSSINSTTPLQQHVNNWGDMQNSISLSSLSLHGQSSNASDEYDHKPTLDIPSDERNGLGFESGEILHHSDETVLFKIDEGLIKAEGGYIQETLAQEQDHDLKGAATLFTLTNCTS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00620 238 Pfam Lateral organ boundaries (LOB) domain 1 39 IPR004883 -
Trre15g00620 238 ProSiteProfiles LOB domain profile. 1 44 IPR004883 -
Trre15g00620 238 MobiDBLite consensus disorder prediction 153 179 - -
Trre15g00620 238 Coils Coil 23 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00620 Trre-Chr15 4490414 4491531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00620 1 84 AS2 family AT3G13850 47.191 1.40e-21 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre15g00620 LOB 5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00620 - - cam:101515615 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04625 11 58000673 58002164 Trre15g00620 15 4490414 4491531 PCT