Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00585 ATGGAGGAAACGCCTATAATCCTCCATGGAACAATTGAAGCTACCATCTTCAATACCTCACCTTACACACCCTTTTTCCCCTTCAATTGCATATGTACAAAGGGAAAGCCTGCTTATGTAACCATCAAGATAGACAACAAAAAGGTTGCAAAAACAAGCAAAGAAAGAAACCGAATTTGGAACCAAACCTTTCATATTCAATGTGCTCATCCAACTAATTCAGTTATTACAATTACATTAAAAACATCAAATTCCATATTAGGAAAATATCATATCAAGGCTCAACAAATTTTAAATGAAGAAAGTTTAATCATCAATGGGTTCTTCCCTCTCCTAATGGAAAATGAAAAACCAAACCCAAAACTTAAATTGAAATTTATATTATGGTTTAAACCTGCAAAATTGGAACAAAGTTTATCAAAGGTACTAAGCAATAGGGAATTTCAAGGGCTAAAGGATGTAAAATTTCCACTAAGGTCTAATTGTCAAGTCAAACTTTATCATGATGCTCATCATTGTCCTACCTTTCATCCTCCCTTTGATCCATGTGGTGCTCCAAAAAATCTATGGGAGGATGTGTTTAAAGCCATTGAGGGTGCAAAGTATATGGTTTATATTGCAGCTTCGTCCCTCAATCCCATGATGGTTTTGGTAAGAGATCCTCATACAAAAATCCAACATGCAAGAGGAATGAGTTTAGGTGAGCTATTGAAAAAGAAGGCAGATGAAGGAGTGGCTGTGAGAGTTATGCTTTGGGATGATGAAACATCATTGCCCTTAATTAAGAACAAAGGTGTAATGAACATACATGATGAGGATACTCTTACATATTTCAACCATACAAAAGTAATATGCAAAAAATGTCCTAGATTACACCACAAATTCCCAACACTATTTTCTCACCATCAAAAAACTATAACAGTTGACACCAAAGTGCTTAATTCTGATAATGATAGACAAATTATGAGCTTTGTTGGTGGATTAGATTTGTGTGATGGTAGATATGATACTGAACAACATTCATTGTTTCAAACACTCATCAAGGAATCACATTGTTATGATTTTTATCAACCAAACATTATAGGAGCTAACCTTAACAAAGGAGGACCAAGAATTCCTTGGCATGATTCTCATGCTTGTGTTATTGGTGAAGCTGCTTGTGATGTATTAACAAATTTTGAGCAAAGATGGACAAAACAATGTGATCCTTCTCTTCTAGTTCCTTCTAGCACCTTGATGAATCTTATTCCTCAAGCAAACTCAAACACTTCAATAGAAAATAATTGGAAAGTTCAAGTTTATAGATCAATTGATCATGCTTCTGTTGATGATTTGTGTGGAAATTTCAATGTGGAGAGAAGCATCCAAGAAGCTTATGTTGAAGCAATTAGGCATGCTGAGAAGTTCATATACATTGAAAACCAATACTTTATTGGAGGATGTCAATGGTGGGAAAAAGATAAGCATGTTGGTTGCACAAATTTGATTCCTATTGAAATTGCACTAAAAGTTGTAAGTAAGATCAAAGCAAAAGAGAGATTTGCAGTGTATATAGTAATACCAATGTGGCCAGAAGGAGTGGCTGAAAGTGAATCTGTTCAAGATATATTGCATTGGACAAGAGAAACTGTGGCAATGATGTATAGGTTGATTGGTGAAGCAATAAAAGATAGTGGTGAAATAGGACATCCAAGAGATTACTTGAATTTCTTTTGCCTTGCAAATAGAGAGCATAAAGGAAAAGGAGAGTATCTTCCTTTAGATTCTCCTCATCCTCAAACAGATTACTGGAATGCACAGAAAAATAGAAGATTCATGGTTTATGTCCATTCCAAGCTCATGATAGTGGATGACATGTACATATTAATAGGTTCAGCTAACATAAACCAAAGATCAATGGATGGGAAAAGGGACACAGAGATTGCAATAGGATGTTTCCAAATTCAAGATGAAGTTGAGAAACAAATGAACCTTAGTGATGTTCATGCATACAGAATGTCACTATGGTATGAACACACAAATAGTTTCAATGAATTGTTCTTAGAGCCACAAAATTTGGAATGTGTGAAAATGATGTGTTCAATTGGTGATCAAATGTGGGAAATCTATAGCAATGAAGAAATTGTTGATATGGAAGGTGTGCACCTTGTTAGTTACCCTATGAAGGTAACACAAGAAGGGTATGTGAAAGATTTGAGTAATGGAGTTTATTTTCCTGATACAAATTCTCTAGTGAAGGGGAAGAGATCTACATTGTTGCCCCCTAACTTGACTACTTAG 2280 0.3513 MEETPIILHGTIEATIFNTSPYTPFFPFNCICTKGKPAYVTIKIDNKKVAKTSKERNRIWNQTFHIQCAHPTNSVITITLKTSNSILGKYHIKAQQILNEESLIINGFFPLLMENEKPNPKLKLKFILWFKPAKLEQSLSKVLSNREFQGLKDVKFPLRSNCQVKLYHDAHHCPTFHPPFDPCGAPKNLWEDVFKAIEGAKYMVYIAASSLNPMMVLVRDPHTKIQHARGMSLGELLKKKADEGVAVRVMLWDDETSLPLIKNKGVMNIHDEDTLTYFNHTKVICKKCPRLHHKFPTLFSHHQKTITVDTKVLNSDNDRQIMSFVGGLDLCDGRYDTEQHSLFQTLIKESHCYDFYQPNIIGANLNKGGPRIPWHDSHACVIGEAACDVLTNFEQRWTKQCDPSLLVPSSTLMNLIPQANSNTSIENNWKVQVYRSIDHASVDDLCGNFNVERSIQEAYVEAIRHAEKFIYIENQYFIGGCQWWEKDKHVGCTNLIPIEIALKVVSKIKAKERFAVYIVIPMWPEGVAESESVQDILHWTRETVAMMYRLIGEAIKDSGEIGHPRDYLNFFCLANREHKGKGEYLPLDSPHPQTDYWNAQKNRRFMVYVHSKLMIVDDMYILIGSANINQRSMDGKRDTEIAIGCFQIQDEVEKQMNLSDVHAYRMSLWYEHTNSFNELFLEPQNLECVKMMCSIGDQMWEIYSNEEIVDMEGVHLVSYPMKVTQEGYVKDLSNGVYFPDTNSLVKGKRSTLLPPNLTT 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00585 759 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 605 632 IPR001736 GO:0003824
Trre15g00585 759 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 35 126 IPR035892 -
Trre15g00585 759 Gene3D Endonuclease Chain A 171 430 - -
Trre15g00585 759 Gene3D Endonuclease Chain A 447 660 - -
Trre15g00585 759 SUPERFAMILY Phospholipase D/nuclease 154 409 - -
Trre15g00585 759 SMART pld_4 605 632 IPR001736 GO:0003824
Trre15g00585 759 SMART pld_4 297 334 IPR001736 GO:0003824
Trre15g00585 759 Pfam Phospholipase D Active site motif 298 334 IPR001736 GO:0003824
Trre15g00585 759 Pfam PLD-like domain 607 656 IPR025202 -
Trre15g00585 759 PIRSF PLD_plant 28 759 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Trre15g00585 759 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 297 334 IPR001736 GO:0003824
Trre15g00585 759 Gene3D C2 domain 33 131 IPR035892 -
Trre15g00585 759 PANTHER PHOSPHOLIPASE D 36 741 IPR015679 -
Trre15g00585 759 SUPERFAMILY Phospholipase D/nuclease 429 687 - -
Trre15g00585 759 Pfam C2 domain 38 101 IPR000008 -
Trre15g00585 759 Pfam Phospholipase D C terminal 678 748 IPR024632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00585 Trre-Chr15 4191307 4195234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00585 30 759 Phospholipase D Gene Family (Wang group) AT1G55180 60.864 0.0 929
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00585 K01115 - gmx:100812642 1250.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00585 15 4191307 4195234 Trre15g00585 15 4191307 4195234 ECH
Trre11g04646 11 58119419 58123272 Trre15g00585 15 4191307 4195234 PCT