Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00576 ATGGCTTACTTGGAGAATACAATGGGTGATTTCTCATTGATTTGTCTCAAGGATTTTGATTTCACTTCTTTATGTTCTCTAAGGAGCACAATAGACACTATCAATGTACTTTTTGTCTGTGTCTACTATACGTCTTTGGTAATCGGTTTAGTCAGAAAAACTGCTGTATGTAGGAACCAAACAAGAAGTTGGATTTTCCAACTTGTGTCAATCTGTTGTGCTTGTATTAGCATTGCTTTTTTTGATATTAGCTTGTGGAATCTCATATACAGAACTGGTAAGTCTAAGGAGCTGAGTTGGTTACCTTGCATTATCAGAGGATTCATTTGGATTTCTTTAACAGTTTCTTTGCTTGTTCAGAGAGTCAAATGGATTAAAATACTAAACTCGGTCTGGTGGGCATCTTCATGTGTACTGGTTTCAACTCTCAACATTGAAATTCTGTTAAAAGATCATGCCATTGAAACTTTTGATATTGTACAGTGGCTTGTGCATTTCCTTCTTCTATACTGTGCCTTCAAAAATCTTGGTTATTTAGGAGAACACAGTGTCCAAGAATTTATTTATGAGCCACTATTAGCTCAAAATAATGAAATTAAACAAACAGGACTAGGCCATGCTACCTTTCCCAGCAAGTTGATTTTCTCTTGGGTTAATTCTTTACTCAGTTTAGGTTACTCAAAGTCACTAGCTCTAGAAGACATACCCTCCCTTGTTTCTGAAGATGAAGCAGGCACTGCATATCAAAGCTTTGTGCATGCATGGGAAGCCCTTGTAAGGGAGAAGACTAATAACAATACAAAGAACTTGGTTCTTTGGTCTGTAGTTAGAACTTACTTAAGAGAAAACATATTAATAGCATTTTTTGCATTACTCAGAACTACTTCTGTTGCAGTTTCACCTCTAATACTCTACGCTTTTGTTAACTACTCAAATAGAACTGAGGTAGATCTCAAACAAGGTTTTTCCATAGTTGGTTTTCTGATTCTCACTAAATTAGTTGAGTCTTTTTCTCAAAGACATTGGTTCTTTAACTCAAGGAGGTCAGGAATGAAAATGAGATCAGCTCTGATGGTGGCAGTTTATCAAAAACAGCTAAAGCTTTCAAACTCCGCAAGGGCAAGACATTCAACCGGCGAAATTGTGAATTACATTGCAATTGATGCATATAGAATGGGAGAATTTCCATGGTGGTTTCATATAACATGGACTTGTGCATTGCAACTTGTTTTGTCAATTGCTATTCTTTTTGGTGTAGTTGGTATTGGTGCTCTTCCTGGTTTAGTACCTCTAGCAATATGTGGACTTCTCAATGTACCACTTGCAAGGATCCTACAAAATTGTCAGCTACAGTTTATGATTGCACAGGATGAACGTCTTAGATCAACTTCAGAGATTCTAAATAGTATGAAAATCATTAAGTTACAATCTTGGGAAGAAAAATTTAAGAACGTTGTTGAGTCCCTACGAGATAAAGAATTCAAATGGTTGTCTAAGATACAGAACCTGAAAGCTTTTGGAACATTTCTTTATTGGCTGTCTCCTACAGTTATTCCTGCTGTTGTCTTCCTTGGATGCGCTTATTTCAATAGTGCACCATTGAATGCTGAAACCATTTTTACAGTTCTTACAACATTGAGGAACATGGGAGATCCTGTTCTTATGATCCCAGAGGCCCTATCTGTTATGATTCAGGTTAAGGTTTCCTTTGATCGCCTCAACACATTTATGCTCGCTGAAGAGCTAAGTAATGATGATAACGGAGGAAAAATAAAGCAATGTTCAGTCAATGCTATGGCAATTCAAGCTGGCAACTTCATTTGGGATCATGAATTCTTGTCCCCCACTTTAAAAGATGTGAATTTAGAGATAAAATGGGGACAGAAAATAGCAGTTTGTGGACCAGTTGGAGCCGGAAAATCATCTCTTCTGCATGCAATACTTGGAGAGATTCCTAAGATTTCAGGAACTGTTTATGTAGGTAGCACACTAGCTTATGTCTCTCAATCTTCTTGGATACAAAGTGGAACGGTTCAAGATAATATACTCTTTGGCAAGCCAATGGACAAAACAAGATATGAGAAAGCAATTAAAGCTTGTGCCTTAGATAAGGATATCAATGATTTTAGACATGGTGATCTTACCGAAATTGGTCAGAGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAACGATGCTGATATCCATCTCCTTGATGATCCTTTCAGTGCAGTTGATGCGCACACTGCTGCTATTCTGTTCAATGACTGTGTCATGACTGCTCTAAGAGAGAAAACAGTAGTTCTTGTGACGCATCAAGTGGAGTTTCTTTCAGAAGTTGATACAATATTGGTAATGGAGGATGGAAAAGTTATTGAATCAGGTACTTATGAGAATCTCCTGACAGCTGGGACAGCCTTTGAACAACTTGTGAACGCCCATAAAGATGCAGTTACCGAGCTAAATCAAGATAATGAAAATAAAAGAGGTTCTGAAAATGATGTTTATGCTAATCCACAAGACTCTCATCCTTTATATCTCACTAAAAATCAGAGCGAGGGGGAGATTTCTACCAAGGATCAACTTGAGGTACAACTCACAAAAGAAGAAGAAAAAGATATTGGCGATGTTGGCTGGAAGCCATTTTGGGATTATATCTCTTATTCCAGGATGTCATACATGCTGTGTTTTATCTTGTTAGCACAATCTACTTTTATGGCTTTGCAGACTGCATCATCCTTTTGGCTTGCTATTGCCATCGAAATTCCAAAAGTAACTAGTGCCACCTTGATTGGAGTTTATTCATTAATTTCTTTTGCTAGCATTTTGTTTGTATATCTAAGGTCTCACTTGAATGCATGCCTCGGATTAAAAGCTTCTACAGCCTTCTTCTCAAGCTTCACTACAGCTATCTTTAATTCCCCTATGATGTTCTTTGATTCAACCCCTATAGGAAGGATTTTAACCAGAGCTTCATCAGATTTAAGTATTTTGGACTTTGATATCCCTCATTCCATCCTCTTTGCATTATCTGTAGCAATTGAAATTCTCGTAATAATTTGCATAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTTGCATCAATATTCATTCAGCAATATTATCAAGCAACTGCAAGGGAACTAATGCGGATCAATGGAACCACTAAAGCTCCAGTCATGAATTTTTCTTCTGAGACATCACTTGGAGTGGTTACTTTAAGAGCATTCGACATGGTAGATAGATTTTTCAAAAACTACTTAAAACTTGTGGACACAGATGCTTCATTGTTCTTTCATTCTAATGTGGCAATGGAATGGGTAATTCTAAGGGTTGAAGCAATTCAAAATTTGACTGTCATCACTGCTGCTTTGTTGCTTGTTCTACTTCCTCGTGGATACGTGTCCCCAGGACTTGTTGGACTGTCTCTTTATTATGCTTTTATTTTGACAACAGCCCAAATATTTTGGACTCGATGGTTTTCCAACTTATCAAACCACGTTATCTCGGTTGAAAGAATCACTCAATTCATTCACATTCCAGCCGAGCCTCCTGCCATTGTGGAGGATAACCGGCCGCCGTCTTCATGGCCTTCCAAGGGTAGGATTGATGTTCAAGGCTTAGAGATTAGGTATCGTCCTAACGCTCCATTAGTCCTTAAGGGAATCACCTGTACATTTCAAGAAGGGAGTAGGGTGGGAGTTGTAGGAAGGACTGGAAGTGGAAAAAGTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTTCAACAGGTGATATTCTCATAGATGGGATAAACATATGCTCAATCGGGTTGAAGGATTTGAGAACAAAGCTAAGCATCATTCCTCAAGAACCAACACTTTTCAAGGGCAACATTAGGACAAACATGGACCCTCTTGGCCTGTACTCAGATGATGAAATATGGAAGGCTTTGGAGAAATGTCACCTAAAGGAAACCATCAGCAGGCTACCAAATCTCTTGGACTCTTCTGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAGCGCCAACTGTTTTGTCTTGGAAGGGTACTACTTAAGAGGAACAAAATTCTAGTTCTGGATGAAGCAACAGCATCCATTGATTCTGCCACAGATACCATTCTACAAAGAATAATTAGACAAGAATTTGCAGAATGCACGGTTATAACTGTTGCTCACAGAGTTCCAACTGTAATAGACAGTGATATGGTCATGGTCCTATCTTATGGGAAACTGGTGGAATATGATGAACCTTCAAAGCTAATGAACACTAACTCTTCATTCTCAAAGCTGGTAGCTGAATATTGGTCTAGCTGCAGCAAGAATTCCTTCACAAACATAAGCAAACAGCAACTATGA 4413 0.385 MAYLENTMGDFSLICLKDFDFTSLCSLRSTIDTINVLFVCVYYTSLVIGLVRKTAVCRNQTRSWIFQLVSICCACISIAFFDISLWNLIYRTGKSKELSWLPCIIRGFIWISLTVSLLVQRVKWIKILNSVWWASSCVLVSTLNIEILLKDHAIETFDIVQWLVHFLLLYCAFKNLGYLGEHSVQEFIYEPLLAQNNEIKQTGLGHATFPSKLIFSWVNSLLSLGYSKSLALEDIPSLVSEDEAGTAYQSFVHAWEALVREKTNNNTKNLVLWSVVRTYLRENILIAFFALLRTTSVAVSPLILYAFVNYSNRTEVDLKQGFSIVGFLILTKLVESFSQRHWFFNSRRSGMKMRSALMVAVYQKQLKLSNSARARHSTGEIVNYIAIDAYRMGEFPWWFHITWTCALQLVLSIAILFGVVGIGALPGLVPLAICGLLNVPLARILQNCQLQFMIAQDERLRSTSEILNSMKIIKLQSWEEKFKNVVESLRDKEFKWLSKIQNLKAFGTFLYWLSPTVIPAVVFLGCAYFNSAPLNAETIFTVLTTLRNMGDPVLMIPEALSVMIQVKVSFDRLNTFMLAEELSNDDNGGKIKQCSVNAMAIQAGNFIWDHEFLSPTLKDVNLEIKWGQKIAVCGPVGAGKSSLLHAILGEIPKISGTVYVGSTLAYVSQSSWIQSGTVQDNILFGKPMDKTRYEKAIKACALDKDINDFRHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIHLLDDPFSAVDAHTAAILFNDCVMTALREKTVVLVTHQVEFLSEVDTILVMEDGKVIESGTYENLLTAGTAFEQLVNAHKDAVTELNQDNENKRGSENDVYANPQDSHPLYLTKNQSEGEISTKDQLEVQLTKEEEKDIGDVGWKPFWDYISYSRMSYMLCFILLAQSTFMALQTASSFWLAIAIEIPKVTSATLIGVYSLISFASILFVYLRSHLNACLGLKASTAFFSSFTTAIFNSPMMFFDSTPIGRILTRASSDLSILDFDIPHSILFALSVAIEILVIICIMVSVTWQVLIVAVPAMVASIFIQQYYQATARELMRINGTTKAPVMNFSSETSLGVVTLRAFDMVDRFFKNYLKLVDTDASLFFHSNVAMEWVILRVEAIQNLTVITAALLLVLLPRGYVSPGLVGLSLYYAFILTTAQIFWTRWFSNLSNHVISVERITQFIHIPAEPPAIVEDNRPPSSWPSKGRIDVQGLEIRYRPNAPLVLKGITCTFQEGSRVGVVGRTGSGKSTLISALFRLVEPSTGDILIDGINICSIGLKDLRTKLSIIPQEPTLFKGNIRTNMDPLGLYSDDEIWKALEKCHLKETISRLPNLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNKILVLDEATASIDSATDTILQRIIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMNTNSSFSKLVAEYWSSCSKNSFTNISKQQL 1470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00576 1470 Gene3D - 1201 1452 IPR027417 -
Trre15g00576 1470 Gene3D - 575 846 IPR027417 -
Trre15g00576 1470 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 601 822 IPR003439 GO:0005524
Trre15g00576 1470 Pfam ABC transporter 617 751 IPR003439 GO:0005524
Trre15g00576 1470 Gene3D ABC transporter type 1, transmembrane domain 866 1199 IPR036640 GO:0005524|GO:0016020
Trre15g00576 1470 SUPERFAMILY ABC transporter transmembrane region 889 1200 IPR036640 GO:0005524|GO:0016020
Trre15g00576 1470 CDD ABC_6TM_ABCC_D2 903 1193 IPR044726 GO:0140359
Trre15g00576 1470 CDD ABCC_MRP_domain1 599 799 - -
Trre15g00576 1470 SMART AAA_5 1244 1436 IPR003593 GO:0016887
Trre15g00576 1470 SMART AAA_5 626 799 IPR003593 GO:0016887
Trre15g00576 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1208 1451 IPR027417 -
Trre15g00576 1470 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 206 1454 - -
Trre15g00576 1470 FunFam ABC transporter C family member 10 267 581 - -
Trre15g00576 1470 Pfam ABC transporter transmembrane region 284 544 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00576 1470 Pfam ABC transporter transmembrane region 905 1167 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00576 1470 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 284 565 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00576 1470 CDD ABC_6TM_ABCC_D1 285 573 IPR044746 GO:0140359
Trre15g00576 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 602 822 IPR027417 -
Trre15g00576 1470 FunFam ABC transporter C family member 5 867 1199 - -
Trre15g00576 1470 FunFam Multidrug resistance protein associated1 578 842 - -
Trre15g00576 1470 Gene3D ABC transporter type 1, transmembrane domain 271 574 IPR036640 GO:0005524|GO:0016020
Trre15g00576 1470 Pfam ABC transporter 1235 1383 IPR003439 GO:0005524
Trre15g00576 1470 ProSitePatterns ABC transporters family signature. 724 738 IPR017871 GO:0005524|GO:0016887
Trre15g00576 1470 FunFam ABC transporter C family member 3 1201 1452 - -
Trre15g00576 1470 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 906 1168 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00576 1470 SUPERFAMILY ABC transporter transmembrane region 272 573 IPR036640 GO:0005524|GO:0016020
Trre15g00576 1470 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1220 1452 IPR003439 GO:0005524
Trre15g00576 1470 CDD ABCC_MRP_domain2 1216 1436 - -
Trre15g00576 1470 MobiDBLite consensus disorder prediction 832 851 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00576 Trre-Chr15 4130293 4136213 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00576 611 864 Calmodulin-binding Proteins AT2G36910 27.143 1.15e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00576 - - gmx:100784827 2273.82