Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00574 ATGGATAAAACAAGATATGAGAAAGCAATTAAAGCTTGCGCCTTATATATGGATATAAATGATTTTAGCCATGGTGATCTTACAGAAATAGGTCAGAGAGGGATCAACCTGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGACGCCGATATATATCTCCTTGATGATCCTTTCAGTGCAGTTGATGCACATACAGCTTCAATACTATTCAATGATTGTGTGATGACTGCTTTAAGAGAGAAGACGGTCATTCTAGTTACTCATCAAGTGGAGTTTCTCTCGGATGTTGATTCTATCTTGGTAATGGAAGGTGGAAAAGTTATTCAATCAGGTAGCTATGAGAATCTCCTAATAGCTGGTACAGCCTTTGAACTACTTACTTCATCATCCTATTGGCTTGCTATAGCCATTGAAATTCCAAAAGTAACTAATGTCACCTTGATTGGAGTTTATGCATTAATTTCTTTTGCTAGTGCTGCTTTTATATATGGAAGAACTTATTTAACTGCACTTTTGGGATTAAAAGCTTCTACTGCTTTCTTCTCGAGCTTCACTACAGCTATCTTCAATGCTCCGATGCTTTTCTTTGATTCAACTCCTGTAGGAAGGATTTTAACTAGAGCTTCATCAGATTTGAGTATTTTGGACTTCAATATACCTTATTCCATCACCTTTGTAGTATCAATAACACTTGAAATTGCGGTGGTTATTTGTATAATGGTTTCAGTCACATGGCAAGTTCTCATTATTGCTATTCCTGCAATGGTTGCATCAATATTCATTCAGAATTATTATCAAGCTACTGCAAGGGAACTAGTACGGATCAATGGAACCACCAAAGCTCCAGTAATGAATTTTGCAGCTGAGATATCACATGGAGTGGTTACTGTAAGAGCATTCAACATGGTAGACAGATTTTTCAAAAACTTCATAAAACTTGTGGACACAGATGCTTCATTGTTCTTTCATTCCAATGTGGTAATGGAATGGGTAATTCTAAGGGTTGAAGCAATTCAAAATTTGACTGTCATCACTGCAGCTTTGTTACTTATTCTACTTCCTCGGGGATATGTATCCTCAGGCCTCGTGGGACTGTCTCTTTCTTATGCTTTTACCTTGACAGGAGCCCAAGTATTTTGGACTAGATGGTTTTCCAACTTATCAAACTATATTATCTCTGTTGAAAGAATCAATCAATTCATTCACATACCAGCTGAGCCTCCTGCCATTGTCGATAATAACCGACCTCCATTTTCATGGCCTTCCAAGGGCAGGATTGATCTTCAAGGCTTAGAGATTAGTTATCGTCCTAATGCTCCATTAGTCCTTAAGGGAATCACTTGTACATTTAAAGAAGGGAGTAGGGTGGGAGTTGTAGGAAGGACTGGAAGTGGAAAAAGTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTTCGAGAGGTGATATTCTCATAGATGGGATTAATATATGCTCAATCGGGTTGAAGGATTTGAGAATGAAGCTAAGCATCATTCCACAAGAACCAACACTTTTCAAGGGAAGCATTAGGACAAACCTGGACCCTCTAGGCCTGTACTCGGACGATGAAATATGGAAGGTTGTAGAGAAATGTCAGCTTAAGGAAACAATCGATAAGCTACCAAGTCTCTTGGACTCTTCGGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGAGAAAGGCAATTGATTTGTCTTGGAAGAGTTCTACTTAAGCGAAACAGAATTCTAGTTTTGGATGAAGCTACTGCTTCCATTGATTCTGCCACAGATGTGATTCTACAAAGAGTAATTAGACAAGAATTTGCAGAATGCACGGTTATAACCGTTGCTCACAGAATTCCAACTGTAATCGACAGTGACATGGTCATTGTCCTATCTTACGGGAGATTGGTTGAATTTGATGAGCCTTCAAAGCTAATGAACACCAACTCTTCATTCTCAAAGCTGGTAGCTGAATATTGGTCTAGCTGCAGAAAGAATTCCTTCACAAACATAAGCAAACAGCAACTATGA 2055 0.3888 MDKTRYEKAIKACALYMDINDFSHGDLTEIGQRGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTASILFNDCVMTALREKTVILVTHQVEFLSDVDSILVMEGGKVIQSGSYENLLIAGTAFELLTSSSYWLAIAIEIPKVTNVTLIGVYALISFASAAFIYGRTYLTALLGLKASTAFFSSFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDFNIPYSITFVVSITLEIAVVICIMVSVTWQVLIIAIPAMVASIFIQNYYQATARELVRINGTTKAPVMNFAAEISHGVVTVRAFNMVDRFFKNFIKLVDTDASLFFHSNVVMEWVILRVEAIQNLTVITAALLLILLPRGYVSSGLVGLSLSYAFTLTGAQVFWTRWFSNLSNYIISVERINQFIHIPAEPPAIVDNNRPPFSWPSKGRIDLQGLEISYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDGINICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKVVEKCQLKETIDKLPSLLDSSVSDEGGNWSLGERQLICLGRVLLKRNRILVLDEATASIDSATDVILQRVIRQEFAECTVITVAHRIPTVIDSDMVIVLSYGRLVEFDEPSKLMNTNSSFSKLVAEYWSSCRKNSFTNISKQQL 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00574 684 Gene3D - 1 125 IPR027417 -
Trre15g00574 684 CDD ABC_6TM_ABCC_D2 122 407 IPR044726 GO:0140359
Trre15g00574 684 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 130 IPR027417 -
Trre15g00574 684 Pfam ABC transporter 28 64 IPR003439 GO:0005524
Trre15g00574 684 SUPERFAMILY ABC transporter transmembrane region 147 414 IPR036640 GO:0005524|GO:0016020
Trre15g00574 684 SMART AAA_5 458 643 IPR003593 GO:0016887
Trre15g00574 684 Pfam ABC transporter 449 597 IPR003439 GO:0005524
Trre15g00574 684 CDD ABCC_MRP_domain2 430 650 - -
Trre15g00574 684 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 135 382 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00574 684 Gene3D ABC transporter type 1, transmembrane domain 126 414 IPR036640 GO:0005524|GO:0016020
Trre15g00574 684 FunFam ABC transporter C family member 3 415 666 - -
Trre15g00574 684 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 434 666 IPR003439 GO:0005524
Trre15g00574 684 Pfam ABC transporter transmembrane region 152 382 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00574 684 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 665 IPR027417 -
Trre15g00574 684 Gene3D - 415 666 IPR027417 -
Trre15g00574 684 FunFam Multidrug resistance associated protein, putative 1 69 - -
Trre15g00574 684 FunFam ABC transporter C family member 5 118 413 - -
Trre15g00574 684 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 133 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00574 Trre-Chr15 4108798 4113253 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00574 430 681 Calmodulin-binding Proteins AT2G36910 31.008 7.57e-32 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00574 - - gmx:100784827 891.723