Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00571 ATGGTTTACTTTGAGAATACAATGGGTGATTTCTCATTGATTTGTCTAAAAGATTTTGATTTCACTTCATTATGTTCTCTACGGAGCACAATAGACACAGTAAATATACTTTTTGTTTGTGCCTACTACACATCTTTGTTTATCAGTTTAATCAGAAAAACTTCTTCAAATAGGAGCCATACAAGAAGTTGGATTTTCAAACTTGTTTCAATCTGTTGTGCTCTTATTAGCATTACTTATTTGGTTATTGGCTTGTGGAATCTCATAGAGAAAACTGATAACTCTAAGGAGCTGAGCTGGTTAGCTTGCAGTATCAAAGGAATCATTTGGATTTCTTTAACAGTTTCTTTGCTTGTTCAGAGAGGCAAATGGATTAAAATACTAAACTCTGTCTGGTGGGCAACTTCTAGTGTATTGGTTTCAACTCTCAACATTGACATTCTGTTCAAAGGCCATGACGCCTTTGAAACTTTTGATATCATAATATGGCTTGTACACTTTCTTCTACTATTATGTGCCTTCAAAAATCTTAGTTATTTAGGAACTAATAGTGTCCAAGAATGTTTGTCTGAACCACTATTAGATCAGAAAATTGAAACTAAACAAACAGAACTAGCCTATGCTACTTTTCTCAGCAAGTTAATTTTCTCTTGGGTTAACTCTTTACTCAGTTTAGGTTACTCAAAGCCACTAACTCTTGAAGACATACCCTCCCTTGTTTCTGAAGATGAAGCAAGCACTGCCTATCAAAACTTTGTGCATGCATGGGAATCCCTTGTAAAGGAGAGGAATAAGAACAGTACAAAGAGCATGGTTCTTTGGTCTGTAGTTAAAACTTACTTAAAAGAAAACACATTAATAGCATTCTATGCACTACTCAGAACTATTTCTGTTGTAGTTTCACCTCTAATACTCTACGCTTTTGTTAACTACTCAAAAAGAACTGAGCCTAATCTCAAAGAAGGCTTTTCTATAGTTGGTTTTCTAATTCTAGCCAAATTGGTAGAGTCTTTGTCTCAAAGACATTGGTTTTTTAACTCAAGGAGGTCAGGAATGAAAATTAGATCAGCTCTGATGGTGGCAATTTATCAAAAGCAGCTAAAGCTTTCTAGCTCAGCAAGGACAAGACACTCGGCAGGCGAAATTATGAATTACATTGCAGTTGATGCATACAAAATGGGAGAATTCCCATGGTGGTTTCATATAACATGGACTTCTGTATTGCAACTTGTTATGTCCATTGCTATCCTTTTTGGTGTTGTTGGTATTGGTGCTCTTCCTGGTTTAGTCCCTCTTCTTATATGTGGACTTCTCAATGTACCGTTTGCAAGGATCCTACAAAATTGTCAGTCGCAGTTTATGACTGCACAGGACGAGCGTCTTCGATCAACTTCAGAAATTCTAAATAGTATGAAGATCATTAAGTTACAATCGTGGGAAGAAAAATTTAAGAACTTAGTCGAGTCATTACGTGATAAAGAGTTTGTGTGGTTGTCTAAAGCGCAGATCCTGAAAGCTTCTAGTTCATTTCTTTTTTGGCTGTCTCCTACAGTTATATCTGCTGTTGTTTTCATTGGATGTGCTGTTTCCAAGAGTGCACCATTGAATGCTGAAACCATTTTCACAGTTCTTGCAACATTGAAGAACATGGGAGATCCAGTAAAAATGATCCCAGAGGCTCTGTCCATTATGATTCAAGTTAAGGTTTCCTTTGATCGTCTTAATAAATTTTTGCTTGATGAAGAACTAAAAAATGATGAAAAAAGTGAAAGAAACATAAAGCAGTGTTCAGCTAATGCTGTGGAAATTCAAGATGGCAACTTCACTTGGGATCATGAATCTGTGTCCCCGGCTTTAACAGATGTGAATTTAGAAATCAAATGGGGACAGAAAATAGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAATACTTGGAGAGATTCCCAAGATTCGAGGAACTATAAGTGGCACGCTTGCCTATGTTTCTCAATCTTCTTGGATACAAAGTGGAACAGTTCGAGATAATATACTCTTTGGCAAGCCAATGGACAAAATAAGATATGAGAATGCTATCAAAGCATGTGCCTTGGATGAGGATATCAATGATTTTAGTCACGGGGATCTTACAGAAATAGGTCAGAGAGGGATTAACCTGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGAGCAGTCTACAGAGATGCTGATATCTATCTCCTTGACGACCCTTTCAGTGCAGTCGACGCACACACTGCTGCTATTCTGTTCAAGGACTGTGTTATGGCTGCTCTAAGAGAAAAAACAATCATTCTTGTGACACATCAAGTGGAGTTTCTACCAGAAGTTGATACAATATTGGTAATGGAGGATGGAAGAATTATTCAATCAGGCAGTTATGAGAATCTGCTGACAGCTGGGACAGCCTTTGAACAACTTGTGAACGCCCATAAAGACGCAGTTACTGAGTGGAATCAAGATAACAAAAACAGAAGAGGTTCCGAAAATGTTGTTGTGGCTAATCCACAAGAGACACATAGCTTTCATCTCACTAAAAACCAAAGCAAGAGGGAGAATTCTGCCAGAGGTCAATTTGGGGTACAACTTACAAAAGAGGAAGAAAAAGAGATTGGCAACACAGCATCAACCTTTTGGCTTGCTATTGCCATTGAAATTCCAAAAGTAACTAGTGCCACATTGATTGGAGTTTATTCCTTAATTTCTTGTTCTGGTGTTATGTTTGTATATCTAAGGTCTTACTTGAATGCGCATCTCGGATTAAAAGCTTCTACTGCATACTTCTCAAGCTTTACTGCAGCTATCTTCAATTCTCCTATGATGTTCTTTGATTCGACCCCTGTAGGAAGAATTTTAACCCGAGCTTCATCAGATTTGAGTATTTTGGACTTTGATATGCCTCATTCCATCCACTTTGCATTATCAGTAGCAATTGAAGTACTGGTAATCATTTGCATAATGGTTTCGGTCACATGGCAGGTTCTCATTGTTGCTGTTCCTGCAATGGTGGCATCAATATTCATTCAGCAATACTATCAAGCATCTGCAAGGGAACTAATGCGGATCAATGGAACAACCAAAGCTCCTGTCATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACTGTAAGAGCATTCAACATGGTAGATAGACTTATCGAATACTACTTAAAACTTGTGGACACAGATGCTACACTGTTCTTTCATTCCAATGTGGCCATGGAATGGATGGTTATACGGATTGAGGCACTTCAAAGTTTTACGGTTGTCACTGCAGCTTTGTTTCTTATTATACTTCCACATGGATATGTGTCCCCAGGACTTGTGGGACTGTCTCTTTTTTATGCATTTAATCTGACAGGAGCCCATATATTTTGTACTCGATGGTTTTCTAACTTAGCAAACCACGTAATCTCTGTTGAAAGAATCAAGCAATTCATTCACATTCCAGCCGAGCCTCCTGCAATTGTGGAGGGTAACAGGCCGCCATCATCATGGCCTTCCAAGGGTACGATTGAAGTTCAAGGCATAGAGATTAGATATTGTCCTGACGCTCCATTAGTCCTTAAGGGAATCACTTGTACATTTAAAGAAGGGAGTAGGGTGGGAGTTGTTGGAAGGACTGGAAGTGGAAAAAGTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTTCAAGAGGTGACATTCTCATAGATGGGATTAATATATGCTCAATCGGGTTGAAGGATTTGAGAATGAAGCTAAGCATCATTCCTCAAGAACCAACACTTTTCAAGGGCAGCATTAGGACAAACCTGGACCCTCTAGGCCTGTATTCGGATGATGAAATATGGAAGGCTTTGGAGAAATGTCACCTTAAGGAAACAATAAGCAGGCTACCAAGTCTCTTGGACTCTTCTGTGAGTGACGAAGGTGGTAATTGGAGCTTAGGACAGCGCCAATTGTTTTGTCTAGGAAGGGTACTACTTAAGAGGAACAGAATTCTAGTTCTGGATGAAGCTACTGCCTCCATTGACTCTGCTACAGATTCCATTCTACAAAAAGTAATTCGACAAGAATTTGCAGAATGCACGGTTATAACTGTTGCTCACCGAATTCCAACTGTAATAGACAGTGACATGGTCATGGTCTTATCTTACGGGAAACTGGTGGAATATGACAAGCCTTCAAAGCTAATGAACACCAACTCTTCATTCTCTAAGCTAGTAGCTGAATATTGGTCTAGCTGCACGAAGAGTTCCGTCCCAATCGTTAACATACAGCAACAATGA 4314 0.3899 MVYFENTMGDFSLICLKDFDFTSLCSLRSTIDTVNILFVCAYYTSLFISLIRKTSSNRSHTRSWIFKLVSICCALISITYLVIGLWNLIEKTDNSKELSWLACSIKGIIWISLTVSLLVQRGKWIKILNSVWWATSSVLVSTLNIDILFKGHDAFETFDIIIWLVHFLLLLCAFKNLSYLGTNSVQECLSEPLLDQKIETKQTELAYATFLSKLIFSWVNSLLSLGYSKPLTLEDIPSLVSEDEASTAYQNFVHAWESLVKERNKNSTKSMVLWSVVKTYLKENTLIAFYALLRTISVVVSPLILYAFVNYSKRTEPNLKEGFSIVGFLILAKLVESLSQRHWFFNSRRSGMKIRSALMVAIYQKQLKLSSSARTRHSAGEIMNYIAVDAYKMGEFPWWFHITWTSVLQLVMSIAILFGVVGIGALPGLVPLLICGLLNVPFARILQNCQSQFMTAQDERLRSTSEILNSMKIIKLQSWEEKFKNLVESLRDKEFVWLSKAQILKASSSFLFWLSPTVISAVVFIGCAVSKSAPLNAETIFTVLATLKNMGDPVKMIPEALSIMIQVKVSFDRLNKFLLDEELKNDEKSERNIKQCSANAVEIQDGNFTWDHESVSPALTDVNLEIKWGQKIAVCGPVGAGKSSLLYAILGEIPKIRGTISGTLAYVSQSSWIQSGTVRDNILFGKPMDKIRYENAIKACALDEDINDFSHGDLTEIGQRGINLSGGQKQRIQLARAVYRDADIYLLDDPFSAVDAHTAAILFKDCVMAALREKTIILVTHQVEFLPEVDTILVMEDGRIIQSGSYENLLTAGTAFEQLVNAHKDAVTEWNQDNKNRRGSENVVVANPQETHSFHLTKNQSKRENSARGQFGVQLTKEEEKEIGNTASTFWLAIAIEIPKVTSATLIGVYSLISCSGVMFVYLRSYLNAHLGLKASTAYFSSFTAAIFNSPMMFFDSTPVGRILTRASSDLSILDFDMPHSIHFALSVAIEVLVIICIMVSVTWQVLIVAVPAMVASIFIQQYYQASARELMRINGTTKAPVMNFAAETSLGVVTVRAFNMVDRLIEYYLKLVDTDATLFFHSNVAMEWMVIRIEALQSFTVVTAALFLIILPHGYVSPGLVGLSLFYAFNLTGAHIFCTRWFSNLANHVISVERIKQFIHIPAEPPAIVEGNRPPSSWPSKGTIEVQGIEIRYCPDAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDGINICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCHLKETISRLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDSILQKVIRQEFAECTVITVAHRIPTVIDSDMVMVLSYGKLVEYDKPSKLMNTNSSFSKLVAEYWSSCTKSSVPIVNIQQQ 1437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00571 1437 SUPERFAMILY ABC transporter transmembrane region 900 1167 IPR036640 GO:0005524|GO:0016020
Trre15g00571 1437 Pfam ABC transporter 1202 1350 IPR003439 GO:0005524
Trre15g00571 1437 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1187 1419 IPR003439 GO:0005524
Trre15g00571 1437 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 883 1148 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00571 1437 Gene3D - 598 829 IPR027417 -
Trre15g00571 1437 CDD ABC_6TM_ABCC_D1 286 574 IPR044746 GO:0140359
Trre15g00571 1437 Pfam ABC transporter 619 751 IPR003439 GO:0005524
Trre15g00571 1437 CDD ABCC_MRP_domain1 601 799 - -
Trre15g00571 1437 FunFam ABC transporter C family member 5 869 1166 - -
Trre15g00571 1437 Gene3D ABC transporter type 1, transmembrane domain 257 583 IPR036640 GO:0005524|GO:0016020
Trre15g00571 1437 Gene3D ABC transporter type 1, transmembrane domain 882 1166 IPR036640 GO:0005524|GO:0016020
Trre15g00571 1437 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 207 1421 - -
Trre15g00571 1437 CDD ABCC_MRP_domain2 1183 1403 - -
Trre15g00571 1437 Pfam ABC transporter transmembrane region 299 546 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00571 1437 Pfam ABC transporter transmembrane region 904 1127 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00571 1437 FunFam Multidrug resistance protein associated1 579 842 - -
Trre15g00571 1437 FunFam ABC transporter C family member 3 1168 1419 - -
Trre15g00571 1437 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 601 822 IPR003439 GO:0005524
Trre15g00571 1437 SUPERFAMILY ABC transporter transmembrane region 273 580 IPR036640 GO:0005524|GO:0016020
Trre15g00571 1437 Gene3D - 1169 1419 IPR027417 -
Trre15g00571 1437 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 286 566 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00571 1437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1175 1418 IPR027417 -
Trre15g00571 1437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 822 IPR027417 -
Trre15g00571 1437 FunFam ABC transporter C family member 10 268 582 - -
Trre15g00571 1437 CDD ABC_6TM_ABCC_D2 883 1160 IPR044726 GO:0140359
Trre15g00571 1437 ProSitePatterns ABC transporters family signature. 724 738 IPR017871 GO:0005524|GO:0016887
Trre15g00571 1437 SMART AAA_5 628 799 IPR003593 GO:0016887
Trre15g00571 1437 SMART AAA_5 1211 1404 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00571 Trre-Chr15 4081067 4088763 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00571 578 925 Calmodulin-binding Proteins AT2G36910 23.158 2.61e-21 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00571 - - gmx:100784827 2172.9