Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00570 ATGGTTTACTTTGAGAATACAATGGGTGATTTCTCATTGATTTGTCTAAAAGATTTTGATTTCACTTCATTATGTTCTCTACGGAGCACAATAGACACAGTAAATATACTTTTTGTTTGTGCCTACTACACATCTTTGTTTATCAGTTTAATCAGAAAAACTTCTTCAAATAGGAGCCATACAAGAAGTTGGATTTTCAAACTTGTTTCAATCTGTTGTGCTCTTATTAGCATTACTTATTTGGTTATTGGCTTGTGGAATCTCATAGAGAAAACTGATAACTCTAAGGAGCTGAGCTGGTTAGCTTGCAGTATCAAAGGAATCATTTGGATTTCTTTAACAGTTTCTTTGCTTGTTCAGAGAGGCAAATGGATTAAAATACTAAACTCTGTCTGGTGGGCAACTTCTAGTGTATTGGTTTCAACTCTCAACATTGACATTCTGTTCAAAGGCCATGACGCCTTTGAAACTTTTGATATCATAATATGGCTTGTACACTTTCTTCTACTATTATGTGCCTTCAAAAATCTTAGTTATTTAGGAACTAATAGTGTCCAAGAATGTTTGTCTGAACCACTATTAGATCAGAAAATTGAAACTAAACAAACAGAACTAGCCTATGCTACTTTTCTCAGCAAGTTAATTTTCTCTTGGGTTAACTCTTTACTCAGTTTAGGTTACTCAAAGCCACTAACTCTTGAAGACATACCCTCCCTTGTTTCTGAAGATGAAGCAAGCACTGCCTATCAAAACTTTGTGCATGCATGGGAATCCCTTGTAAAGGAGAGGAATAAGAACAGTACAAAGAGCATGGTTCTTTGGTCTGTAGTTAAAACTTACTTAAAAGAAAACACATTAATAGCATTCTATGCACTACTCAGAACTATTTCTGTTGTAGTTTCACCTCTAATACTCTACGCTTTTGTTAACTACTCAAAAAGAACTGAGCCTAATCTCAAAGAAGGCTTTTCTATAGTTGGTTTTCTAATTCTAGCCAAATTGGTAGAGTCTTTGTCTCAAAGACATTGGTTTTTTAACTCAAGGAGGTCAGGAATGAAAATTAGATCAGCTCTGATGGTGGCAATTTATCAAAAGCAGCTAAAGCTTTCTAGCTCAGCAAGGACAAGACACTCGGCAGGCGAAATTATGAATTACATTGCAGTTGATGCATACAAAATGGGAGAATTCCCATGGTGGTTTCATATAACATGGACTTCTGTATTGCAACTTGTTATGTCCATTGCTATCCTTTTTGGTGTTGTTGGTATTGGTGCTCTTCCTGGTTTAGTCCCTCTTCTTATATGTGGACTTCTCAATGTACCGTTTGCAAGGATCCTACAAAATTGTCAGTCGCAGTTTATGACTGCACAGGACGAGCGTCTTCGATCAACTTCAGAAATTCTAAATAGTATGAAGATCATTAAGTTACAATCGTGGGAAGAAAAATTTAAGAACTTAGTCGAGTCATTACGTGATAAAGAGTTTGTGTGGTTGTCTAAAGCGCAGATCCTGAAAGCTTCTAGTTCATTTCTTTTTTGGCTGTCTCCTACAGTTATATCTGCTGTTGTTTTCATTGGATGTGCTGTTTCCAAGAGTGCACCATTGAATGCTGAAACCATTTTCACAGTTCTTGCAACATTGAAGAACATGGGAGATCCAGTAAAAATGATCCCAGAGGCTCTGTCCATTATGATTCAAGTTAAGGTTTCCTTTGATCGTCTTAATAAATTTTTGCTTGATGAAGAACTAAAAAATGATGAAAAAAGTGAAAGAAACATAAAGCAGTGTTCAGCTAATGCTGTGGAAATTCAAGATGGCAACTTCACTTGGGATCATGAATCTGTGTCCCCGGCTTTAACAGATGTGAATTTAGAAATCAAATGGGGACAGAAAATAGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAATACTTGGAGAGATTCCCAAGATTCGAGGAACTATAAGTGGCACGCTTGCCTATGTTTCTCAATCTTCTTGGATACAAAGTGGAACAGTTCGAGATAATATACTCTTTGGCAAGCCAATGGACAAAATAAGATATGAGAATGCTATCAAAGCATGTGCCTTGGATGAGGATATCAATGATTTTAGTCACGGGGATCTTACAGAAATAGGTCAGAGAGGGATTAACCTGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGAGCAGTCTACAGAGATGCTGATATCTATCTCCTTGACGACCCTTTCAGTGCAGTCGACGCACACACTGCTGCTATTCTGTTCAAGGACTGTGTTATGGCTGCTCTAAGAGAAAAAACAATCATTCTTGTGACACATCAAGTGGAGTTTCTACCAGAAGTTGATACAATATTGGTAATGGAGGATGGAAGAATTATTCAATCAGGCAGTTATGAGAATCTGCTGACAGCTGGGACAGCCTTTGAACAACTTGTGAACGCCCATAAAGACGCAGTTACTGAGTGGAATCAAGATAACAAAAACAGAAGAGGTTCCGAAAATGTTGTTGTGGCTAATCCACAAGAGACACATAGCTTTCATCTCACTAAAAACCAAAGCAAGAGGGAGAATTCTGCCAGAGGTCAATTTGGGGTACAACTTACAAAAGAGGAAGAAAAAGAGATTGGCAACGTAGGCTTGAAACCATTCTGGGATTATATTTCTTATTCCAGGGGGTCATTCATGTTGTGTTTTATCGTGTTAGCACAATTTGCCTTTATGGCTTTGCAGACAGCATCAACCTTTTGGCTTGCTATTGCCATTGAAATTCCAAAAGTAACTAGTGCCACATTGATTGGAGTTTATTCCTTAATTTCTTGTTCTGGTGTTATGTTTGTATATCTAAGGTCTTACTTGAATGCGCATCTCGGATTAAAAGCTTCTACTGCATACTTCTCAAGCTTTACTGCAGCTATCTTCAATTCTCCTATGATGTTCTTTGATTCGACCCCTGTAGGAAGAATTTTAACCCGAGCTTCATCAGATTTGAGTATTTTGGACTTTGATATGCCTCATTCCATCCACTTTGCATTATCAGTAGCAATTGAAGTACTGGTAATCATTTGCATAATGGTTTCGGTCACATGGCAGGTTCTCATTGTTGCTGTTCCTGCAATGGTGGCATCAATATTCATTCAGCAATACTATCAAGCATCTGCAAGGGAACTAATGCGGATCAATGGAACAACCAAAGCTCCTGTCATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACTGTAAGAGCATTCAACATGGTAGATAGACTTATCGAATACTACTTAAAACTTGTGGACACAGATGCTACACTGTTCTTTCATTCCAATGTGGCCATGGAATGGATGGTTATACGGATTGAGGCACTTCAAAGTTTTACGGTTGTCACTGCAGCTTTGTTTCTTATTATACTTCCACATGGATATGTGTCCCCAGGACTTGTGGGACTGTCTCTTTTTTATGCATTTAATCTGACAGGAGCCCATATATTTTGTACTCGATGGTTTTCTAACTTAGCAAACCACGTAATCTCTGTTGAAAGAATCAAGCAATTCATTCACATTCCAGCCGAGCCTCCTGCAATTGTGGAGGGTAACAGGCCGCCATCATCATGGCCTTCCAAGGGTACGATTGAAGTTCAAGGCATAGAGATTAGATATTGTCCTGACGCTCCATTAGTCCTTAAGGGAATCACTTGTACATTTAAAGAAGGGAGTAGGGTGGGAGTTGTTGGAAGGACTGGAAGTGGAAAAAGTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTTCAAGAGGTGACATTCTCATAGATGGGATTAATATATGCTCAATCGGGTTGAAGGATTTGAGAATGAAGCTAAGCATCATTCCTCAAGAACCAACACTTTTCAAGGGCAGCATTAGGACAAACCTGGACCCTCTAGGCCTGTATTCGGATGATGAAATATGGAAGGCTTTGGAGAAATGTCACCTTAAGGAAACAATAAGCAGGCTACCAAGTCTCTTGGACTCTTCTGTGAGTGACGAAGGTGGTAATTGGAGCTTAGGACAGCGCCAATTGTTTTGTCTAGGAAGGGTACTACTTAAGAGGAACAGAATTCTAGTTCTGGATGAAGCTACTGCCTCCATTGACTCTGCTACAGATTCCATTCTACAAAAAGTAATTCGACAAGAATTTGCAGAATGCACGGTTATAACTGTTGCTCACCGAATTCCAACTGTAATAGACAGTGACATGGTCATGGTCTTATCTTACGGGAAACTGGTGGAATATGACAAGCCTTCAAAGCTAATGAACACCAACTCTTCATTCTCTAAGCTAGTAGCTGAATATTGGTCTAGCTGCACGAAGAGTTCCGTCCCAATCGTTAACATACAGCAACAATGA 4413 0.39 MVYFENTMGDFSLICLKDFDFTSLCSLRSTIDTVNILFVCAYYTSLFISLIRKTSSNRSHTRSWIFKLVSICCALISITYLVIGLWNLIEKTDNSKELSWLACSIKGIIWISLTVSLLVQRGKWIKILNSVWWATSSVLVSTLNIDILFKGHDAFETFDIIIWLVHFLLLLCAFKNLSYLGTNSVQECLSEPLLDQKIETKQTELAYATFLSKLIFSWVNSLLSLGYSKPLTLEDIPSLVSEDEASTAYQNFVHAWESLVKERNKNSTKSMVLWSVVKTYLKENTLIAFYALLRTISVVVSPLILYAFVNYSKRTEPNLKEGFSIVGFLILAKLVESLSQRHWFFNSRRSGMKIRSALMVAIYQKQLKLSSSARTRHSAGEIMNYIAVDAYKMGEFPWWFHITWTSVLQLVMSIAILFGVVGIGALPGLVPLLICGLLNVPFARILQNCQSQFMTAQDERLRSTSEILNSMKIIKLQSWEEKFKNLVESLRDKEFVWLSKAQILKASSSFLFWLSPTVISAVVFIGCAVSKSAPLNAETIFTVLATLKNMGDPVKMIPEALSIMIQVKVSFDRLNKFLLDEELKNDEKSERNIKQCSANAVEIQDGNFTWDHESVSPALTDVNLEIKWGQKIAVCGPVGAGKSSLLYAILGEIPKIRGTISGTLAYVSQSSWIQSGTVRDNILFGKPMDKIRYENAIKACALDEDINDFSHGDLTEIGQRGINLSGGQKQRIQLARAVYRDADIYLLDDPFSAVDAHTAAILFKDCVMAALREKTIILVTHQVEFLPEVDTILVMEDGRIIQSGSYENLLTAGTAFEQLVNAHKDAVTEWNQDNKNRRGSENVVVANPQETHSFHLTKNQSKRENSARGQFGVQLTKEEEKEIGNVGLKPFWDYISYSRGSFMLCFIVLAQFAFMALQTASTFWLAIAIEIPKVTSATLIGVYSLISCSGVMFVYLRSYLNAHLGLKASTAYFSSFTAAIFNSPMMFFDSTPVGRILTRASSDLSILDFDMPHSIHFALSVAIEVLVIICIMVSVTWQVLIVAVPAMVASIFIQQYYQASARELMRINGTTKAPVMNFAAETSLGVVTVRAFNMVDRLIEYYLKLVDTDATLFFHSNVAMEWMVIRIEALQSFTVVTAALFLIILPHGYVSPGLVGLSLFYAFNLTGAHIFCTRWFSNLANHVISVERIKQFIHIPAEPPAIVEGNRPPSSWPSKGTIEVQGIEIRYCPDAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDGINICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCHLKETISRLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDSILQKVIRQEFAECTVITVAHRIPTVIDSDMVMVLSYGKLVEYDKPSKLMNTNSSFSKLVAEYWSSCTKSSVPIVNIQQQ 1470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00570 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 822 IPR027417 -
Trre15g00570 1470 Gene3D - 1202 1452 IPR027417 -
Trre15g00570 1470 FunFam Multidrug resistance protein associated1 579 842 - -
Trre15g00570 1470 CDD ABC_6TM_ABCC_D1 286 574 IPR044746 GO:0140359
Trre15g00570 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1208 1451 IPR027417 -
Trre15g00570 1470 CDD ABCC_MRP_domain1 601 799 - -
Trre15g00570 1470 SMART AAA_5 628 799 IPR003593 GO:0016887
Trre15g00570 1470 SMART AAA_5 1244 1437 IPR003593 GO:0016887
Trre15g00570 1470 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 906 1181 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00570 1470 Pfam ABC transporter 1235 1383 IPR003439 GO:0005524
Trre15g00570 1470 Pfam ABC transporter transmembrane region 299 546 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00570 1470 Pfam ABC transporter transmembrane region 904 1160 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00570 1470 SUPERFAMILY ABC transporter transmembrane region 889 1200 IPR036640 GO:0005524|GO:0016020
Trre15g00570 1470 FunFam ABC transporter C family member 5 868 1199 - -
Trre15g00570 1470 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 601 822 IPR003439 GO:0005524
Trre15g00570 1470 FunFam ABC transporter C family member 10 268 582 - -
Trre15g00570 1470 SUPERFAMILY ABC transporter transmembrane region 273 580 IPR036640 GO:0005524|GO:0016020
Trre15g00570 1470 CDD ABC_6TM_ABCC_D2 900 1193 IPR044726 GO:0140359
Trre15g00570 1470 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 286 566 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00570 1470 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1220 1452 IPR003439 GO:0005524
Trre15g00570 1470 ProSitePatterns ABC transporters family signature. 724 738 IPR017871 GO:0005524|GO:0016887
Trre15g00570 1470 Gene3D - 598 829 IPR027417 -
Trre15g00570 1470 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 207 1454 - -
Trre15g00570 1470 FunFam ABC transporter C family member 3 1201 1452 - -
Trre15g00570 1470 Pfam ABC transporter 619 751 IPR003439 GO:0005524
Trre15g00570 1470 Gene3D ABC transporter type 1, transmembrane domain 869 1199 IPR036640 GO:0005524|GO:0016020
Trre15g00570 1470 Gene3D ABC transporter type 1, transmembrane domain 257 583 IPR036640 GO:0005524|GO:0016020
Trre15g00570 1470 CDD ABCC_MRP_domain2 1216 1436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00570 Trre-Chr15 4081067 4088763 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00570 578 844 Calmodulin-binding Proteins AT2G36910 24.138 2.16e-20 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00570 - - gmx:100784827 2238.77