Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00565 ATGGGAGAATTTCCATGGTGGTTTCATACAACATGGACTTCTGCATTGCAACTTATTCTTTCCATTGGTGTTCTTTTTGGTGTTGTTGGTATTGGTGCTCTTCCTGGTTTAGTACCTCTAGCTATATGTGGACTTCTCAATGTACCATTTGCAAGGATCATACAAAATTGTCAGTCACGGATTATGATTGCACAGGACGAACGTCTTCGAACGACTTCGGAGATTCTAAATAGCATGAAGATTATTAAGTTACAATCATGGGAAGAAAAATTCAAGAACTTAGTTGAGTCACTACGCGATAAAGAGTTTGTATGGTTATCTAAGATACAGTTTTTGAAAGCTACTAATTCATTTCTTTATTGGATGTCTCCTACGGTTGTTTCTGCTGTTGTTTTCCTTGGATGTGCTGTTACCAAGAGTGCTCCATTGAATGCTGAAACCATTTTCACAATTCTTGCAACACTGAGGAACATGGGAGAGCCTGTTAGAATGATCCCTGAGGCACTATCTATTATGATTCAAGTTAAGGTTTCGTTTGGTCGTCTTAATAAGTTTTTGCTTGATGAAGAACTAAACAATGATGATAGTGAAAAAAATTTACAGCAATGTTCGGTTAATGCTGTGGAAATTCAAGATGGCAACTTCAATTGGGATCATCAATCTATCTCTCCAACTTTAAAAGATGTGAATCTAGAAATCAAACGGGGGCAGAAAATTGCAGTTTGTGGACCAGTTGGAGCCGGAAAATCGTCACTTTTGTATGCAATACTTGGAGAGATTCCTAAGATTTCAGGAACTGTTAATGTAGGTGGCACACTAGCCTATGTCTCTCAATCTTCTTGGATACAAAGTGGAACAGTTCAAGATAATATACTCTTTGGAAAGCCAATGGACAAAACAAGATATGAGAAAGCAATTAAAGCTTGCGCCTTAGATAAGGATATCAATGATTTTAGCCATGGTGATCTTACAGAAATTGGTCAGAGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTATAATGACGCTGATATCTATCTCCTTGATGATCCTTTCAGTGCAGTCGATGCACATACAGCTTCGATACTATTCAATGATTGTGTGATGACTGTTTTAAGAGAGAAAACAGTCATTCTAGTTACTCATCAAGCGGAGTTTCTCTCACAAGTTGAAACTATCTTGGTAATGGAAGGCGGAAAAGTTATTCAATCAGGTAGTTATGAGAATCTCTTAACAGCTGGAACAGCCTTTGAACTACTTGTGAATGCTCATAAAGACACAATTACAGACTTGAATCAAGATAATGAAAATAAAATAGGTTCTGAAAATCAAAGTGAGGGAGAGATTTCTAGTATCAAGGGACCAATTGGTCCACAGCTTACACAAGAGGAAGAAAGAGTGATTGGTAATGTTGGATGGAAGCCATTCTGTGATTATATTAATTATTCCAAAGGGACATTCATGTTGTGTTTCATGATTTTAGCACAATCAGCTTTTTTGGGTTTCCAGACTGCCTCAACCTTTTGGCTTGCTATAGCCATTGAAATTCCAAAAGTAACTAATGTCACCTTGATTGGAGTCTATGCATTGATTTCTTTTGCTAGTGCTGCTTTTGTTTATGTAAGATCTTACTTAAGTGCACTTTTGGGATTAAAAGCTTCTACTGCTTTCTTCTCAAGCTTCACCAAAGCTATCTTCAATGCTCCGATGCTTTTCTTTGATTCAACTCCTGTAGGAAGAATTTTAACTAGAGCTTCATCAGATTTGAGTATTTTGGACTTTGATATACCTTGTTCCATCACCTTTGTAATATCTATTGCAATTGAAATTTTGGTGATAATTTGTATAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTTGCATCAATATTCGTTCAGCAATATTATCAAGCTACTGCAAGGGAACTAGTACGGATCAATGGAACCACCAAAGCTCCAGTAATGAATTTTGCAGCCGAGACATCACTTGGAGTGGTTACTGTTAGAGCATTCAACATGGTAGACAGATTTTTCAAAAACTACTTAAAACTTGTGGACACGGATGCTTCACTGTTCTTTCACTCTAATGTGACAATGGAATGGTTAGTTTTAAGGATTGAAGCACTTCAAAATTTAACTGTCATCACTGCAGCTTTGTTTCTTATTCTACTACCTCAGAGATATGTATCCCCAGGCCTTGTGGGACTGTCGCTCTCTTATGCTTTTACCCTGACACAAATCCAAATATTTTGGACTAGATGGTTTTCCAACTTATCAAACTATATTATATCTGTTGAAAGAATCAAGCAATTCATTCACATACCAGCTGAGCCTCCTGCTATTGTGGATGGTAACCGACCTCCATCTTCATGGCCGTCCAAGGGCAAGATTGACCTTCAAGGCATAGAGATTCGATATCGCCCTAATGCTCCGCTAGTCCTCAAGGGAATCACTCGTACATTTAAAGAAGGGAGTCGGGTAGGAGTTGTTGGAAGGACTGGAAGCGGAAAAAGTACACTTATTAGTGCTTTGTTTCGCTTAGTTGAGCCTTCAAGAGGTGATATTCTCATTGATGGGATGAACATTTGCTCAATGGGGTTGAAGGATTTGAGAAATAGGCTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGAAGCATTAGGACAAACCTGGATCCTCTAGGCCTGTACTCAGATGATGAAATATGGAAGGCTGTCGAGAAATGTCAGCTTAAGGAAACAATCAGCAAGCTACCAAATCTCCTGGACTCTACAGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAACGCCAATTGTTTTGTCTTGGAAGAGTTCTACTTAAGAGAAACAGAATTCTTGTTCTAGATGAGGCTACTGCATCCATTGACTCGGCCACAGATGCCATTCTCCAAAGAGTGATTAGACAAGAATTTGCAGAATGCACAGTTATAACTGTGGCTCATAGAGTTCCAACTGTAATAGACAGTGACATGGTCCTGGTTTTATCTTATGGGAAATTGGTGGAATATGATGAGCCTTCAAAGCTAATGGACACAAATTCTTCATTTTCTAAGCTGGTAGCTGAATATTGGTCCAGTTGCAGGAAGAATTCCTTCACAAATATTAGCAGCAATGAATAA 3189 0.3866 MGEFPWWFHTTWTSALQLILSIGVLFGVVGIGALPGLVPLAICGLLNVPFARIIQNCQSRIMIAQDERLRTTSEILNSMKIIKLQSWEEKFKNLVESLRDKEFVWLSKIQFLKATNSFLYWMSPTVVSAVVFLGCAVTKSAPLNAETIFTILATLRNMGEPVRMIPEALSIMIQVKVSFGRLNKFLLDEELNNDDSEKNLQQCSVNAVEIQDGNFNWDHQSISPTLKDVNLEIKRGQKIAVCGPVGAGKSSLLYAILGEIPKISGTVNVGGTLAYVSQSSWIQSGTVQDNILFGKPMDKTRYEKAIKACALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTASILFNDCVMTVLREKTVILVTHQAEFLSQVETILVMEGGKVIQSGSYENLLTAGTAFELLVNAHKDTITDLNQDNENKIGSENQSEGEISSIKGPIGPQLTQEEERVIGNVGWKPFCDYINYSKGTFMLCFMILAQSAFLGFQTASTFWLAIAIEIPKVTNVTLIGVYALISFASAAFVYVRSYLSALLGLKASTAFFSSFTKAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPCSITFVISIAIEILVIICIMVSVTWQVLIVAVPAMVASIFVQQYYQATARELVRINGTTKAPVMNFAAETSLGVVTVRAFNMVDRFFKNYLKLVDTDASLFFHSNVTMEWLVLRIEALQNLTVITAALFLILLPQRYVSPGLVGLSLSYAFTLTQIQIFWTRWFSNLSNYIISVERIKQFIHIPAEPPAIVDGNRPPSSWPSKGKIDLQGIEIRYRPNAPLVLKGITRTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDGMNICSMGLKDLRNRLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKAVEKCQLKETISKLPNLLDSTVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRQEFAECTVITVAHRVPTVIDSDMVLVLSYGKLVEYDEPSKLMDTNSSFSKLVAEYWSSCRKNSFTNISSNE 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00565 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 430 IPR027417 -
Trre15g00565 1062 Gene3D ABC transporter type 1, transmembrane domain 465 792 IPR036640 GO:0005524|GO:0016020
Trre15g00565 1062 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 174 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00565 1062 Pfam ABC transporter 828 976 IPR003439 GO:0005524
Trre15g00565 1062 ProSitePatterns ABC transporters family signature. 333 347 IPR017871 GO:0005524|GO:0016887
Trre15g00565 1062 CDD ABCC_MRP_domain1 208 408 - -
Trre15g00565 1062 FunFam ABC transporter C family member 3 794 1045 - -
Trre15g00565 1062 Gene3D ABC transporter type 1, transmembrane domain 2 193 IPR036640 GO:0005524|GO:0016020
Trre15g00565 1062 MobiDBLite consensus disorder prediction 441 458 - -
Trre15g00565 1062 MobiDBLite consensus disorder prediction 441 463 - -
Trre15g00565 1062 CDD ABC_6TM_ABCC_D1 1 182 IPR044746 GO:0140359
Trre15g00565 1062 CDD ABCC_MRP_domain2 809 1029 - -
Trre15g00565 1062 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 813 1045 IPR003439 GO:0005524
Trre15g00565 1062 FunFam ABC transporter C family member 10 1 190 - -
Trre15g00565 1062 Gene3D - 795 1045 IPR027417 -
Trre15g00565 1062 SUPERFAMILY ABC transporter transmembrane region 4 188 IPR036640 GO:0005524|GO:0016020
Trre15g00565 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 801 1044 IPR027417 -
Trre15g00565 1062 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 208 431 IPR003439 GO:0005524
Trre15g00565 1062 CDD ABC_6TM_ABCC_D2 493 786 IPR044726 GO:0140359
Trre15g00565 1062 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 499 760 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00565 1062 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 1047 - -
Trre15g00565 1062 FunFam ABC transporter C family member 5 463 792 - -
Trre15g00565 1062 SUPERFAMILY ABC transporter transmembrane region 485 793 IPR036640 GO:0005524|GO:0016020
Trre15g00565 1062 SMART AAA_5 837 1022 IPR003593 GO:0016887
Trre15g00565 1062 SMART AAA_5 235 408 IPR003593 GO:0016887
Trre15g00565 1062 Pfam ABC transporter 226 360 IPR003439 GO:0005524
Trre15g00565 1062 Gene3D - 202 436 IPR027417 -
Trre15g00565 1062 FunFam Multidrug resistance protein associated1 187 451 - -
Trre15g00565 1062 Pfam ABC transporter transmembrane region 8 153 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00565 1062 Pfam ABC transporter transmembrane region 531 759 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00565 Trre-Chr15 4026680 4031654 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00565 195 557 Calmodulin-binding Proteins AT2G36910 24.870 7.25e-21 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00565 - - gmx:100784827 1719.9