Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00564 ATGGATTATATATATGCAGGTGAAATTTCAGAGCCACTGCTAGAACAGAAAGTTGAAAGAAAACAAACAGGAATAGGCCATGCTACTTTTCACAGCAAGTTGATATTCTCTTGGGTTAATTCTTTACTCAGTTTAGGTTACTCAAAGCCACTAGTTCTTGAAGATATACCTTCTCTTGTTCCTGAAGATGAATCAAACATGGCTTATAAAAAATTTGTTCATGCTTGGGAATCACTTGTTAGAGAGAGGACTAACAACAATACAAACAGTTTGGTTCTTTGGTCTATAGTTAGAATTTACTTCAAAGAAAATTTATTAATAGCATTTTATGCATTTATCAGAACTATTTCTGTTGTAGTTTCACCACTAATATTGTATGCTTTTGTTAACTACTCAAATAGAACTGAAAAAAATCTTAGAGAAGGTCTTTCCATTGTTGGTTTTTTGATTGTCACAAAAGTATTTGAGTCTTTGTTTCAAAGACATTGGGTTTTTAATTCAAGGAGATCAGGGATGAAAATGAGATCAGCTCTTATGGTGGCAGTTTATCAAAAGCAGCTAAGGCTTTCTAGCTCAGCAAGAACACGACACTCGGCTGGTGAAATTGTGAATTACATTGCAGTTGATGCATATAGAATGGGAGAATTTCCATGGTGGTTTCATACAACATGGACTTCTGCATTGCAACTTATTCTTTCCATTGGTGTTCTTTTTGGTGTTGTTGGTATTGGTGCTCTTCCTGGTTTAGTCCCTCTTGTTATATGTGGACTTCTCAATGTACCATTTGCAAGGATCATACAAAATTGTCAATCACAGTTTATGATTGCACAGGACGAACGTCTTCGGTCGACTTCTGAGATTCTAAATAGTATGAAGATTATTAAGTTACAATCATGGGAAGAAAAATTCAAGAACTTAGTTGAGTCGCTACGCGATAAAGAGTTTGTATGGTTATCTAAGACACAGTTTTTGAAAGCTACTAATTCATTTCTTTATTGGATGGCTCCTACAGTTGTTTCTGCTGTTGTTTTCCTTGGATGTGCTGTTACCGGGAGTGCACCTTTGAATGCTGAAACCATTTTCACAATTCTTGCAACATTGAGAAACATGGGAGAACCTGTTAGAATGATCCCTGAGGGTCTATCTATTATGATTCAAAATAAGGTTTCGTTGGATCGTCTTAATAAGTTTTTGCTTGATGAAGAACTAAACAATGATGATAGTGAAAGAAACTTACAGCAATGTTCGGTTAATGCTGTGGAAATTCAAGATGGCAACTTCAATTGGGATCATGAATCTATCTCTCCAACTTTAAAAGATGTGAATTTAGAAATCAAACCGGGACAAAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAAAGTCATCACTTTTGTATGCAATACTTGGAGAGATTCCGAAGATTTCAGGAACTTTTAATGTAGGTGGCACACTAGCCTATGTCTCTCAATCTTCTTGGATACAAAGTGGAACAGTTCAAGATAATATACTCTTTGGAAAGCCAATGGACAAAACAAGATACGAGAAAGCAATTAAAGCTTGCGCCTTAGATAAGGATATCAATGACTTTAGCCATGGTGATCTTACAGAAATAGGTCAGAGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGATATCTATCTCCTTGATGATCCTTTTAGTGCAGTTGATGCGCATACAGCGGCAATACTATTCAATGATTGTGTGATGACTGCTTTAAGAGAGAAAACAGTCATTCTAGTTACTCATCAAGTGGAGTTTCTTTCAGATGTTGATTCTATCTTGGTAATGGAAGGTGGAAAAGTTATTCAATCAGGTAGTTATGAGAATCTCCTGACAGCTGGAACAGCCTTTGAACTGCTTGTGAGTGCTCATAAAGACACAATTACTGACTTGAATCAAGATAATCAAAATAAATATGGTTTTGAAAATGAGGTTTTGACTAAAACTCAAAGTGAGGGAGAGATTTCTAGTATCAAGGGTCCAATTGGTGCACAGCTTACACAAGAGGAAGAAAAAGTGATTGGTAATCTTGGATGGAAGCCATTCTGGGATTATATTAATTATTCCAAAGGGACATTCATGCTGTGTTTGATTATATTAGTACATTCTGTTTTTGTGGCTTTCCAAACTGCCTCAACCTTTTGGCTAGCTATAGCTATTGAAATTCCAAAAGTAACTAATGCCACCTTGATTGGAGTTTATGCATTAATTTCTTTTGCTGGTGTTGTTTTTGTTTATGTAAAATCTTACTTGACTGCACTTTTGGGATTAAAAGCTTCTACTACTTTCTTCTCAAGCTTCACTAAAGCTATCTTCGATGCTCCGATGCTTTTCTTTGATTCAACTCCTGTAGGAAGAATTTTAACTAGAGCTTCTTCAGATTTAAGTATTTTGGACTTTGATATACCTTATTCCATCACCTTTGTAGCATGTGTAGGAATTGAAATTTTGGTGATGATTTGTATAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAACGGTTGCATCAATATACATTCAGCAATATTATCAAGCCACTGCAAGTGAACTAATACGGATCAATGGAACAACCAAAGCTCCAGTCATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACTGTAAGAGCATTCAATATTGCAGACAGATTTTTCAAAAACTACTTACAACTAGTGGACACAGATGCTTCACTGTTCTTTCACTCTAATGTGACAATGGAATGGGAAATTTTAAGGATTGAAGCACTTCAAAATTTGACTGTCATCACTGCAGCTTTGTTGCTTATTCTACTACCTCAGGGATATGTATCCCCGGGTCTTGTGGGACTGTCACTCTCTTATGCTTTTACCTTGACAGCAGGCCAAATATTTTGGACTAGATGGTTTTCCAACTTATCAAACTATATTATATCTGTTGAAAGAATCAAACAATTCATTCACATACCAGCTGAGCCTCCTGCTATTGTGGATGATAACCGACCTCCATCTTCATGGCCGTCCAAGGGCAAAATTGATCTTCAAGGCTTAGAGATTCGATATCGCCCTAATTCTCCGTTAGTCCTCAAGGGAATCACTTGTACATTTAAAGAAGGGAGTAGGGTAGGAGTTGTTGGAAGGACTGGAAGTGGTAAAAGTACACTTATTAGTGCTTTGTTTCGCTTAGTTGAGCCTTCTAGAGGTGATATTCTCATTGATGGGATGAACATTTGCTCAATGGGGTTGAAAGATTTGAGAATGAAGCTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGAAGCATTAGGACAAACCTGGATCCTCTAGGCCTGTACTCAGATGATGAAATATGGAAGGCTGTGGAGAAATGTCAGCTTAAGGAAACAATCAGCAATCTACCAAGTCTCTTGGACTCCTCAGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAACGCCAATTGTTTTGTCTTGGAAGAGTTCTACTTAAGAGAAACCGAATTCTTGTTTTGGATGAAGCTACTGCATCCATTGACTCTGCCACAGATGCTATTCTACAAAGAGTGATTAGACAAGAATTTGCAGAATGCACAGTTATAACTGTGGCTCATAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTTTTATCCTATGGGAAATTGGTGGAATATGATGAGCCTTCAAAGCTAATGGACACAAACTCTTCATTTTCTAAGCTGGTAGCTGAATATTGGTCCAGTTGCAGGAAGAATTCCTCCTCAAATATTAGCAGCCAGCAGCAATGA 3846 0.3752 MDYIYAGEISEPLLEQKVERKQTGIGHATFHSKLIFSWVNSLLSLGYSKPLVLEDIPSLVPEDESNMAYKKFVHAWESLVRERTNNNTNSLVLWSIVRIYFKENLLIAFYAFIRTISVVVSPLILYAFVNYSNRTEKNLREGLSIVGFLIVTKVFESLFQRHWVFNSRRSGMKMRSALMVAVYQKQLRLSSSARTRHSAGEIVNYIAVDAYRMGEFPWWFHTTWTSALQLILSIGVLFGVVGIGALPGLVPLVICGLLNVPFARIIQNCQSQFMIAQDERLRSTSEILNSMKIIKLQSWEEKFKNLVESLRDKEFVWLSKTQFLKATNSFLYWMAPTVVSAVVFLGCAVTGSAPLNAETIFTILATLRNMGEPVRMIPEGLSIMIQNKVSLDRLNKFLLDEELNNDDSERNLQQCSVNAVEIQDGNFNWDHESISPTLKDVNLEIKPGQKIAVCGPVGAGKSSLLYAILGEIPKISGTFNVGGTLAYVSQSSWIQSGTVQDNILFGKPMDKTRYEKAIKACALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKTVILVTHQVEFLSDVDSILVMEGGKVIQSGSYENLLTAGTAFELLVSAHKDTITDLNQDNQNKYGFENEVLTKTQSEGEISSIKGPIGAQLTQEEEKVIGNLGWKPFWDYINYSKGTFMLCLIILVHSVFVAFQTASTFWLAIAIEIPKVTNATLIGVYALISFAGVVFVYVKSYLTALLGLKASTTFFSSFTKAIFDAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITFVACVGIEILVMICIMVSVTWQVLIVAVPATVASIYIQQYYQATASELIRINGTTKAPVMNFAAETSLGVVTVRAFNIADRFFKNYLQLVDTDASLFFHSNVTMEWEILRIEALQNLTVITAALLLILLPQGYVSPGLVGLSLSYAFTLTAGQIFWTRWFSNLSNYIISVERIKQFIHIPAEPPAIVDDNRPPSSWPSKGKIDLQGLEIRYRPNSPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDGMNICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKAVEKCQLKETISNLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMDTNSSFSKLVAEYWSSCRKNSSSNISSQQQ 1281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00564 1281 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 717 978 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00564 1281 Gene3D ABC transporter type 1, transmembrane domain 683 1010 IPR036640 GO:0005524|GO:0016020
Trre15g00564 1281 Gene3D ABC transporter type 1, transmembrane domain 80 402 IPR036640 GO:0005524|GO:0016020
Trre15g00564 1281 SUPERFAMILY ABC transporter transmembrane region 93 400 IPR036640 GO:0005524|GO:0016020
Trre15g00564 1281 Gene3D - 414 648 IPR027417 -
Trre15g00564 1281 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 27 1265 - -
Trre15g00564 1281 FunFam ABC transporter C family member 3 1012 1263 - -
Trre15g00564 1281 SUPERFAMILY ABC transporter transmembrane region 700 1011 IPR036640 GO:0005524|GO:0016020
Trre15g00564 1281 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 420 643 IPR003439 GO:0005524
Trre15g00564 1281 FunFam Multidrug resistance protein associated1 399 663 - -
Trre15g00564 1281 CDD ABC_6TM_ABCC_D1 106 394 IPR044746 GO:0140359
Trre15g00564 1281 FunFam ABC transporter C family member 10 88 402 - -
Trre15g00564 1281 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1031 1263 IPR003439 GO:0005524
Trre15g00564 1281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 641 IPR027417 -
Trre15g00564 1281 ProSitePatterns ABC transporters family signature. 545 559 IPR017871 GO:0005524|GO:0016887
Trre15g00564 1281 SMART AAA_5 1055 1247 IPR003593 GO:0016887
Trre15g00564 1281 SMART AAA_5 447 620 IPR003593 GO:0016887
Trre15g00564 1281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1019 1262 IPR027417 -
Trre15g00564 1281 Pfam ABC transporter 1046 1194 IPR003439 GO:0005524
Trre15g00564 1281 CDD ABCC_MRP_domain1 420 620 - -
Trre15g00564 1281 CDD ABCC_MRP_domain2 1027 1247 - -
Trre15g00564 1281 Pfam ABC transporter transmembrane region 107 365 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00564 1281 Pfam ABC transporter transmembrane region 716 977 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00564 1281 Gene3D - 1012 1263 IPR027417 -
Trre15g00564 1281 FunFam ABC transporter C family member 5 680 1010 - -
Trre15g00564 1281 Pfam ABC transporter 438 572 IPR003439 GO:0005524
Trre15g00564 1281 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 105 386 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00564 1281 CDD ABC_6TM_ABCC_D2 711 1004 IPR044726 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00564 Trre-Chr15 4000665 4006394 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00564 407 674 Calmodulin-binding Proteins AT2G36910 24.915 3.16e-20 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00564 - - gmx:100784827 2013.81