Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00563 ATGGATTATATATATGCAGGTGAAATTTCATGGATTTGTGTGAAGAATTTTGATATCAATTCTTTAAGTTCTCAAAGGAGCTTAATAGACACAATCAATATACTCTTTCTATGTGTCTACTTCACATCTTTAATTATCACTATAATCAGAAAAACTTCTACAAATGAAAGCCACAAATATATTTGGATTTTCCATATTGTTTCAATCTGTTGTGGTGTTATTAGCATTGCATTTTTCAGTATTGGATTGTGGAATCTCATAGCAAAAACTGATAACTCTGAGAAATTGATTTGCATGATCAAAGGATTCATTTGGATTTCTCTTGCTGTTTCTTTGATTGTTCAAAGAGTCAAATGGATTAGAATATTAAACTCTATATGGTGGTTATCTTCTTGTCTATTGGTTTCAGCTATCAACATTGAAATTCTGTTCAAAAATCATGCAATTGAAGCTTTAGATATTGTACAGTGGCTTGTACATTTCCTTCTTTTGTATTGTGCCTTCAAAAATATTGGTTATTTAGGAAATAATAGTGCTCAAGAAGATTTATCTGAGCCACTATTAGGTCAAAAAATTGAAACTAATCAAACAAGATTAGGTCATGCTAATTTCTTCAGCAAATTGATTTTCTGTTGGGTTAATTCTTTACTCAGTTTAGGTTACTCGAAGCCGCTAAAACTTGAAGATATACCTTCCCTAGATTCTGATGATGAAGAAAACATGGCTTATCATAAATTTGTTCATGCTTGGGAATCACTTGTTAGAGAGAGGACTAAGAACAATACAAACAGTTTGGTTCTTTGGTCTATAGTTAGAATTTACTTAAAAGAAAATTTATTAATAGTTTTTTATGCATTAATCAGAACTTTTTCTGTAGTAGTTTCACCTTTAATAGTGTATGCTTTTGTTAACTACTCGAATAGAACCGAGAAAGATCTTAGAGAAGGTTTTTCCATAGTTGGTATTTTGATTGTCACCAAAGTGTTTGAGTCTTTGTCTCAAAGACATTGGTTTTTTAACTCAAGGAGGTCTGGAATGAAAATGAGATCAGCTCTGATGGTGGCAGTTTACCGGAAGCAGCTAAGGATTTCTAGCTCGGCAAGGACAAGACACTCGGCTGGAGAAATTGTGAATTACATTGCAGTTGATGCTTATAGAATGGGAGAATTTCCATGGTGGTTTCATAGAACTTGGACTTCTGCATTGCAACTTGTTCTTTCTATTGGTGTACTTCTTTGTGTTATTGGTATTGGTGCTCTTCCTGGTTTAGTCCCTCTTCTTATTTGTGGACTTCTCAATGTACCATTTGCAAGGATCATGCAAAATTGTCAGTCACAGTTTATGATTGCACAGGATGATCGTCTTCGATCAACTTCAGAGATTCTGAACAGTATGAAAATCATTAAGTTACAGTCATGGGAAGAAAAGTTCAAGAACTTAGTTGAGTTGCTGCGCGATAAAGAGTTTGTATGGTTGTCTAAGACACAAATCCTGAAAGCTACTAATTCATTTTTTTATTGGATGTCTCCTACAGTTATTTCTGCGGTTGTTTTCCTTGGATGTGCTGTTACCGGGAGTGCTCCATTGAATGTTGAAAACATTTTCACAGTTCTTGCAACATTAAAGAACATGGGAGAACCTGTTAGAATGATCCCTGAGGCACTATCTATTATGATTCAAGTTAACGTTTCATTTGATCGTCTTAATAAGTTTTTGCTTGATGAAGAACTAAACAATGATGATAGTGAAAGAAACTTACAGCAATGTTCGGTTAATGCTGTGGAAATTCAAGATGGCAACTTCATTTGGGATCATGATTCTGTCTCTCCAACTTTAAAAGATGACGCATTTTTAATTAATTTAGAAATCAAACGGGGACTGAAAATTGCAGTTTGTGGACCAGTTGGAGCAGGAAAATCATCACTTTTGTATGCAATACTTGGAGAGATTCCTAAGATTTCAGGAACTGTTAATGTCGATGGCACACTATCCTATGTTTCTCAATCTTCTTGGATACAAAGTGGAACAGTTCGAGATAATATACTCTTTGGCAAGCCAATGGACAAAACAAGATATGAGAAAGCAATTAAAGCCTGTGCCTTAGATAATGATATCAGTGATTTTAGCTATGGTGATCTTACAGAAATTGGTCAGAGAGGGATTAATATGAGCGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGATATCTATCTCCTTGATGATCCTTTCAGTGCAGTTGATGCACATACAGCTGCAATACTATTCAGTGATTGTGTCATGACTGCGTTAAGAGAGAAAACAGTCATTCTAGTTACACATCAAGTGGAGTTTCTCTCAGATGTTGATACTATATTGGTAATGGAGGGTGGAAAAGTTATTCAATCAGGTAGTTATGAGAATCTCCTAACAGCTGGAACAGCCTTTGAACTACTTGTTATTGCTCATAAAGACTCAATTACTAACTTAAATCAAGATAATGAAAATAAAAAAGGTTCTGAAAATGAGGTTTTGACTAAAAATCAAAGTGAGGGAGAGATTGCTAGTATGAAGGGACCAATTGGTGCACAGCTTACACAAGAGGAAGAAAAAGTGATTGGTAATGTTGGATGGCAGCCATTCTGGGATTATATTAATTATTCCAAAGGGACATTCATGCTGTGTTTGATTATTTTAGCACAGTCTGGTTTTTTGGCTCTGCAGATTGCATCAACTTTTTGGCTTGCTATAGCCATTGAAATTCCAAAAATAACTAACACCACCTTGATTGGTGTTTATGCATTAGTTTCTTTTTCTAGTTCTGGTTTGGTTTATGTAAGATCTTACTTGACTGCACTTTTGGGATTAAAAGCTTCTACTGCTTCCTTCTCAAGCTTCACAACAGCTATCTTCAATGCATCAATGCTTTTCTTTGATTCAACTCCTGTAGGAAGAATTTTAACTAGAGCTTCATCAGATTTGAGTATTTTGGACTTTGATATACCTTGTTCCATCACCTTTGTAGCATCTATAGCAATTGAAATTTTGGTGATAATTTGTGTAATGGTTTCTGTCACATGGCAAGTTCTCATTTTTGCTGTTCCTGCAATGGTTGCATCAATATTCATTCAGCAATATTATCAAGCCACTGCAAGTGAATTAATACGGATCAATGGAACCACCAAAGCTCCAATCATGAATTTTGCAGCTGAGACATCACATGGAGTGGTTACTGTAAGAGCACTCAACATGGTAGACAGATTTTTCAAAAACTACTTAAAACTTGTGGACACAGATGCTTCAATGTTCTTTCACTCGAATGTGACAATGGAATGGGTAGTTTTAAGAATTGAAGCACTTCAAAATTTGACTGTCATCACTTTAGCTTTGTTGCTTATTCTACGACCTCAGGGATATGTATCCCCAGGCCTTGTTGGACTGTCTCTTTCCTATGCTTTTACCTTGACGGGAAACCAAATAAATTGGACTAGATGGTTTTCCAATCTATCTAACTATATTATCTCTGTTGAAAGAATCAAGCAATTCATTCACATACCAGCTGAGCCTCCTGCTATTGTGGATAACAACCGACCTCCATCTTCATGGCCTTCCAAGGGCAAGATTGACCTTCAAGGTTTGGAGATTAGATATCGCCCTAATGCTCCGTTAGTCCTCAAGGGAATCACTTGTACATTTCAAGAAGGGAGTAGGGTGGGAGTTGTAGGAAGGACTGGAAGTGGAAAAAGTACACTTATTAGTGCTTTGTTTCGCTTAGTTGAGCCTTCTAGAGGTGATATTCTCATTGATGGTATGAACATATGTTCAATGGGGTTGAAGGATTTGAGAATGAGGCTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGAAGCATTAGGACAAACCTGGATCCTCTAGGCCTGTACTCAGATGATGAAATATGGAAGGCTGTGGAAAAATGTCAGCTTAAGGAAACAATCAGCAAGCTACCAAGTCTCCTGGACTCTACAGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAACGCCAATTGTTTTGTCTTGGAAGAGTTCTACTTAAGAGAAACAAAATTCTCGTTTTGGATGAAGCTACTGCATCCATCGACTCTGCCACAGATGCCACTCTACAAAGAGTGATTAGACAAGAATTTGCAGAATGCACAGTTATAACTGTGGCTCATAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTTTTATCTTATGGGAAATTGGTGGAATATGATGAGCCTTCAAAACTAATGGACACAAATTCTTCATTTTCTAAGCTGGTAGCTGAATATTGGTCCAGTTGCAGGAAGAATTCCTTCACAAATATTAGCAGCCAGCAGCAATGA 4380 0.3655 MDYIYAGEISWICVKNFDINSLSSQRSLIDTINILFLCVYFTSLIITIIRKTSTNESHKYIWIFHIVSICCGVISIAFFSIGLWNLIAKTDNSEKLICMIKGFIWISLAVSLIVQRVKWIRILNSIWWLSSCLLVSAINIEILFKNHAIEALDIVQWLVHFLLLYCAFKNIGYLGNNSAQEDLSEPLLGQKIETNQTRLGHANFFSKLIFCWVNSLLSLGYSKPLKLEDIPSLDSDDEENMAYHKFVHAWESLVRERTKNNTNSLVLWSIVRIYLKENLLIVFYALIRTFSVVVSPLIVYAFVNYSNRTEKDLREGFSIVGILIVTKVFESLSQRHWFFNSRRSGMKMRSALMVAVYRKQLRISSSARTRHSAGEIVNYIAVDAYRMGEFPWWFHRTWTSALQLVLSIGVLLCVIGIGALPGLVPLLICGLLNVPFARIMQNCQSQFMIAQDDRLRSTSEILNSMKIIKLQSWEEKFKNLVELLRDKEFVWLSKTQILKATNSFFYWMSPTVISAVVFLGCAVTGSAPLNVENIFTVLATLKNMGEPVRMIPEALSIMIQVNVSFDRLNKFLLDEELNNDDSERNLQQCSVNAVEIQDGNFIWDHDSVSPTLKDDAFLINLEIKRGLKIAVCGPVGAGKSSLLYAILGEIPKISGTVNVDGTLSYVSQSSWIQSGTVRDNILFGKPMDKTRYEKAIKACALDNDISDFSYGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFSDCVMTALREKTVILVTHQVEFLSDVDTILVMEGGKVIQSGSYENLLTAGTAFELLVIAHKDSITNLNQDNENKKGSENEVLTKNQSEGEIASMKGPIGAQLTQEEEKVIGNVGWQPFWDYINYSKGTFMLCLIILAQSGFLALQIASTFWLAIAIEIPKITNTTLIGVYALVSFSSSGLVYVRSYLTALLGLKASTASFSSFTTAIFNASMLFFDSTPVGRILTRASSDLSILDFDIPCSITFVASIAIEILVIICVMVSVTWQVLIFAVPAMVASIFIQQYYQATASELIRINGTTKAPIMNFAAETSHGVVTVRALNMVDRFFKNYLKLVDTDASMFFHSNVTMEWVVLRIEALQNLTVITLALLLILRPQGYVSPGLVGLSLSYAFTLTGNQINWTRWFSNLSNYIISVERIKQFIHIPAEPPAIVDNNRPPSSWPSKGKIDLQGLEIRYRPNAPLVLKGITCTFQEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDGMNICSMGLKDLRMRLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKAVEKCQLKETISKLPSLLDSTVSDEGGNWSLGQRQLFCLGRVLLKRNKILVLDEATASIDSATDATLQRVIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMDTNSSFSKLVAEYWSSCRKNSFTNISSQQQ 1459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00563 1459 ProSitePatterns ABC transporters family signature. 723 737 IPR017871 GO:0005524|GO:0016887
Trre15g00563 1459 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 201 1443 - -
Trre15g00563 1459 CDD ABCC_MRP_domain1 594 798 - -
Trre15g00563 1459 Pfam ABC transporter 1224 1372 IPR003439 GO:0005524
Trre15g00563 1459 SUPERFAMILY ABC transporter transmembrane region 879 1189 IPR036640 GO:0005524|GO:0016020
Trre15g00563 1459 Gene3D ABC transporter type 1, transmembrane domain 251 583 IPR036640 GO:0005524|GO:0016020
Trre15g00563 1459 FunFam Multidrug resistance protein associated1 573 841 - -
Trre15g00563 1459 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 594 821 IPR003439 GO:0005524
Trre15g00563 1459 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1209 1441 IPR003439 GO:0005524
Trre15g00563 1459 SUPERFAMILY ABC transporter transmembrane region 267 574 IPR036640 GO:0005524|GO:0016020
Trre15g00563 1459 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 279 560 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00563 1459 CDD ABC_6TM_ABCC_D2 889 1182 IPR044726 GO:0140359
Trre15g00563 1459 CDD ABC_6TM_ABCC_D1 280 568 IPR044746 GO:0140359
Trre15g00563 1459 FunFam ABC transporter C family member 10 262 576 - -
Trre15g00563 1459 CDD ABCC_MRP_domain2 1205 1425 - -
Trre15g00563 1459 Gene3D - 1190 1441 IPR027417 -
Trre15g00563 1459 FunFam ABC transporter C family member 3 1190 1441 - -
Trre15g00563 1459 FunFam ABC transporter C family member 5 858 1188 - -
Trre15g00563 1459 Gene3D - 617 852 IPR027417 -
Trre15g00563 1459 Pfam ABC transporter transmembrane region 281 540 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00563 1459 Pfam ABC transporter transmembrane region 895 1156 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00563 1459 Gene3D ABC transporter type 1, transmembrane domain 860 1188 IPR036640 GO:0005524|GO:0016020
Trre15g00563 1459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 593 816 IPR027417 -
Trre15g00563 1459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1197 1440 IPR027417 -
Trre15g00563 1459 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 895 1156 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre15g00563 1459 SMART AAA_5 625 798 IPR003593 GO:0016887
Trre15g00563 1459 SMART AAA_5 1233 1425 IPR003593 GO:0016887
Trre15g00563 1459 Pfam ABC transporter 619 750 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00563 Trre-Chr15 3992903 3998684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00563 581 852 Calmodulin-binding Proteins AT2G36910 26.756 3.77e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00563 - - gmx:100784827 2206.02