Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00504 ATGGATGGTTTGAATTGGGATGGCTCACAACTTGAAGAGAACACACCATTTATGTGGAATACTCAAAGCTTTGAAGGTGGCTACAACATATCAAACTCTCTTACTCATCAAATACAAGAGATGCATAAAGTTCAAATTGGTAACACAAATTCTGAAAGAGTGATTCCAAACACAAATCTTTCACAGCATGCAACAACTATGGCAGTCAAATCAAAAGCTGGATCCAGCTGGAGGGAAGAACCTTTAATACCTCAATCATATAAGTCTCTTTCACCTTACAATATTATGCCAGATTTCAACATGGCCCACCAACAAAAACAACTCAACAACTCTTTTGATTGTTTGCTTTCTGCTAGTAATAGCAACACAGCAGACACTTCTGTTGAAAATGATGATGATGGAATTTCAAAGTTATTTTCTGACTGCAAAAATTTATGGAACTTCAGTTATGTCAGTAACACAACTTCCTCTGGTGAAGCTGATAGTAATGTTTCAAATGAGTACACAAGAAACAAAGACATTCAGTGTCCACTCAGTATTGAACTTGATGAAACAATGTCTCAAAGCTCATCAGATCAATACATGAATCAAAGAAAAGCAATACAATCAAGTACTATTCATAATTCTTCATCTGCTGAAGACGGTTTTAGGCTTATCACTGATAAACCACCAAAAAGCAAGAAACCAAGATATGATAAGGGACCTTGTTCAACTAATATAAATTTTCAACAACCAAATTCATCATCATCAATGTGTTATTCATCTTCAAATGAAGAACCTGATCCAGAGGCAATAGCACAAATGAAGGAAATGATGTATAGAGCTGCAGCATTTAGACCAGTGAATTTTGGAATGGATGATATTGATGTGATTGAAAAAAAGCCAAAGAGGAAGAATGTTAAGATATCAAATGATCCACAAACAGTGGCTGCAAGACATAGAAGGGAAAGAATAAGTGATAGGATTAGGGTTTTGCAAAAGATTGTTCCTGGTGGAAACAAAATGGACACTGCTTCAATGCTTGATGAGGCTGCAAATTATCTCAAATTTTTAAGATCACAAGTTAAGGCACTTGAAAGTTTAGGGAACAAAGTTAATTCAATGGATTGTAATCCAACTAGTATTGCTTTCTCTTTTAATCCATCTTTTCACATGCAAATTCCTAATCACAACAATCATCATTCACAGGGTTAA 1194 0.3509 MDGLNWDGSQLEENTPFMWNTQSFEGGYNISNSLTHQIQEMHKVQIGNTNSERVIPNTNLSQHATTMAVKSKAGSSWREEPLIPQSYKSLSPYNIMPDFNMAHQQKQLNNSFDCLLSASNSNTADTSVENDDDGISKLFSDCKNLWNFSYVSNTTSSGEADSNVSNEYTRNKDIQCPLSIELDETMSQSSSDQYMNQRKAIQSSTIHNSSSAEDGFRLITDKPPKSKKPRYDKGPCSTNINFQQPNSSSSMCYSSSNEEPDPEAIAQMKEMMYRAAAFRPVNFGMDDIDVIEKKPKRKNVKISNDPQTVAARHRRERISDRIRVLQKIVPGGNKMDTASMLDEAANYLKFLRSQVKALESLGNKVNSMDCNPTSIAFSFNPSFHMQIPNHNNHHSQG 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00504 397 Pfam Helix-loop-helix DNA-binding domain 312 351 IPR011598 GO:0046983
Trre15g00504 397 Coils Coil 341 361 - -
Trre15g00504 397 SMART finulus 308 357 IPR011598 GO:0046983
Trre15g00504 397 MobiDBLite consensus disorder prediction 218 232 - -
Trre15g00504 397 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 361 IPR036638 GO:0046983
Trre15g00504 397 MobiDBLite consensus disorder prediction 186 260 - -
Trre15g00504 397 Gene3D - 307 370 IPR036638 GO:0046983
Trre15g00504 397 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 302 351 IPR011598 GO:0046983
Trre15g00504 397 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 124 384 IPR045843 GO:0003700|GO:0006355
Trre15g00504 397 MobiDBLite consensus disorder prediction 236 260 - -
Trre15g00504 397 MobiDBLite consensus disorder prediction 186 215 - -
Trre15g00504 397 CDD bHLH_AtIND_like 303 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00504 Trre-Chr15 3613193 3614677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00504 110 393 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 50.662 6.48e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g00504 HLH 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00504 - - psat:127076443 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00504 15 3613193 3614677 Trre15g00504 15 3613193 3614677 ECH