Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00496 ATGAATTTTCTTTCTGTATTGCTTGTTGTCCTCCTAACTATTTTGGGTTTGATAAAGGCTCAAGATCATTCAGGATTCATTAGCTTAGATTGTGGCTTACCTGTAGATTCGTGCTATTCTGCGGTGATTACAGGCATAAATTACATTTCAGATGCTAAATTCATAGATACTGGTGTAAGTAAGAGGGTAAAACGTATAGACAATATTATAGTGACCGGTGATCGAGTACAAGAATATGTGAGGATCTTTCCTAATGGAGTGAGAAATTGTTACAAAATTAATGTAACAAGTGGTGCTAAATATTTAATCAGAGCTATTTTCGGTTATGGTAACTATGATAATCTAAATAAGCCACCACAATTTGATCTTCATCTTGGGGCTAATTTTTGGGATACAGTGAAGTTCACCGATACATCATCAGAATACGGAGCGTCTGAGATCATTTACACTCCATCACTAAATTACATACAACTATGTCTTGTTAACATTGGCAAAGGAACTCCACTCATTTCAGCTATAGAACTGAGACCTTTGAACAATACAGCTTATGAAACAAACTCAGCGAAATCAGCATTATCAGTCTATGGGAGGTTCGGTTTAGGTTCCAACACAGGCTTAAGGTGCAGTGATGATGTTTATGACCGCTTCTGGATGCAATATGAATTATCCAGTGAATGGAGACGATTAAGCACCTCTGTTAACAATGTAAATCTATCAATTCCGAATCCTTTTAAACCACCTGCAACTATAATGAGCACTGCGGTTACACCAGTAAATGCCAGTACCCCTTTACATTTTGAATGGGAAGCAGATAATGTAAATGATCAATACTACTTATACATACACTTATATGACTTCCAAGAGCGGGAAGCCAATGAAACTAGAGCGTTCAATATCACACTGAATGGCATGTATCTTGGTGGACCTATGGTGCTTAGATACCGGGATGAAAATATCTTTGGAAGTTATAATGCCTTACCTTTGACTGGAAGCACAAGGTATCAACTTTCCCTTTCCAAAATAGAGAATTCAATCCTTCCACCCATCATCAATGCCATTGAAGTTTATAAAGTTCAAGACTTCTCACAATCAGAAACGGAACAAAATGATGTTGATGCTATCACAAACATCAAGAAGGCTTATAAGGTGGCTCGGAATTGGCAAGGAGATCCATGTGCCCCTGTGAAATACATGTGGGAAGGCCTAAAATGCAGTATGGATGGCAATAACATACCAAGAATCACATCCTTGAACTTATCTTCAAGTGGACTGACAGGGAAGATAGCATCTTCCATCTCGAAGCTCACTATGTTAGAACACTTGGATTTGTCAAACAATAGCTTAAATGGTCCCATACCTGATTTTCTGATACAACTGCATTCACTAAAAGTCTTAAATGTAGGGAAGAACAAACTTACAGGGTTAGTTCCAAGTGGACTGCTTGAGAGATCAAAAACTAAATCACTGTCACTTAGCGTGGACGGTAACTCTGGTCTTTGTATGGCGAAATCCTGCAGAAATCAGAGTTCGCATGTACCACTAATTGCTTCGATTTCAGCAATAACTGTTGTAATCCTCTTGATTTCTCTTGGATTTTGGATATTCAGAAGACAAAAAGTTACATCCACAACTTCTAAGAAAAGGGGTTCATTGGAATCAAATCACCAAGCATTCAGTTACACTGAAATTCTAAATATTACTGATAACTTCAAAACTATTATTGGAGAAGGAGGATTTGGAAAAGTTTATCTTGGTGTTCTGCAAAATCGCAACCAAGTTGCGGTTAAGATACTCTCACCATCCTCAATGCAAGGTTATAAGGAATTTCAATCAGAGGCACAACTTCTAATGATCGTTCATCATAGAAATTTGGTCTCTCTCATTGGATATTGCGATGAAGATGAAATCAAAGCATTGTTGTATGAATACATGGCCAATGGAAATCTCCAACAACATCTATCAGTGAAAAATACAAATATCTTAAAATGGAGTGAGAGACTTAACATTGCAGTTGATTCAGCTCACGGATTGGATTATCTGCATAATGGATGTAAACCACCTATTATGCATAGAGATTTGAAGCCTTCCAATATATTACTAGACGAAAACATGCATGCCAAGATTGCAGATTTTGGTCTAAGTAGAGTTTTTGGTGATGATATTGATTCTCATATATCCACGCGCCCTGCCGGTACATTTGGTTATGTTGATCCTGAATATCAGAGAACAGGAAACACAAATAAGAAAAATGATGTCTACAGCTTTGGGATAGTTCTATTTGTGTTGATCACTGGTCGTCAAGCAATAGTAAGAGCAGCTGGACAAAACATTCACATACTTGAATGGGTTATTCCTATAATTGAAGCGGGAGATATTCAAAATGTCGTTGATTCAAAGTTAGAGGGTGAATTCAGCATCGATTCAGCACGGAAAGTTATAGAGATAGCCATGTCATGCACTTCACCAAAAGCAGTTGAAAGGCCAGATATAAGCCAAATATTAGCAGAGTTAAAGGAATGCCTATCTTTGGATATGGTTCAGAGAAACCGTGGAAACACAAGAGCTATAGATGAATTGGTTTCTATAGCTACTGTATCAGATACCACTATTTCAGCTAGATAA 2622 0.3753 MNFLSVLLVVLLTILGLIKAQDHSGFISLDCGLPVDSCYSAVITGINYISDAKFIDTGVSKRVKRIDNIIVTGDRVQEYVRIFPNGVRNCYKINVTSGAKYLIRAIFGYGNYDNLNKPPQFDLHLGANFWDTVKFTDTSSEYGASEIIYTPSLNYIQLCLVNIGKGTPLISAIELRPLNNTAYETNSAKSALSVYGRFGLGSNTGLRCSDDVYDRFWMQYELSSEWRRLSTSVNNVNLSIPNPFKPPATIMSTAVTPVNASTPLHFEWEADNVNDQYYLYIHLYDFQEREANETRAFNITLNGMYLGGPMVLRYRDENIFGSYNALPLTGSTRYQLSLSKIENSILPPIINAIEVYKVQDFSQSETEQNDVDAITNIKKAYKVARNWQGDPCAPVKYMWEGLKCSMDGNNIPRITSLNLSSSGLTGKIASSISKLTMLEHLDLSNNSLNGPIPDFLIQLHSLKVLNVGKNKLTGLVPSGLLERSKTKSLSLSVDGNSGLCMAKSCRNQSSHVPLIASISAITVVILLISLGFWIFRRQKVTSTTSKKRGSLESNHQAFSYTEILNITDNFKTIIGEGGFGKVYLGVLQNRNQVAVKILSPSSMQGYKEFQSEAQLLMIVHHRNLVSLIGYCDEDEIKALLYEYMANGNLQQHLSVKNTNILKWSERLNIAVDSAHGLDYLHNGCKPPIMHRDLKPSNILLDENMHAKIADFGLSRVFGDDIDSHISTRPAGTFGYVDPEYQRTGNTNKKNDVYSFGIVLFVLITGRQAIVRAAGQNIHILEWVIPIIEAGDIQNVVDSKLEGEFSIDSARKVIEIAMSCTSPKAVERPDISQILAELKECLSLDMVQRNRGNTRAIDELVSIATVSDTTISAR 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00496 873 Pfam Malectin-like domain 29 358 IPR024788 -
Trre15g00496 873 Gene3D Ribonuclease Inhibitor 368 525 IPR032675 -
Trre15g00496 873 Gene3D Phosphorylase Kinase; domain 1 549 643 - -
Trre15g00496 873 SUPERFAMILY L domain-like 377 501 - -
Trre15g00496 873 SMART serkin_6 568 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00496 873 ProSitePatterns Serine/Threonine protein kinases active-site signature. 688 700 IPR008271 GO:0004672|GO:0006468
Trre15g00496 873 ProSitePatterns Protein kinases ATP-binding region signature. 574 596 IPR017441 GO:0005524
Trre15g00496 873 Gene3D Transferase(Phosphotransferase) domain 1 644 860 - -
Trre15g00496 873 ProSiteProfiles Protein kinase domain profile. 568 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00496 873 Pfam Leucine Rich Repeat 438 454 IPR001611 GO:0005515
Trre15g00496 873 FunFam Leucine-rich repeat receptor-like kinase 369 502 - -
Trre15g00496 873 Pfam Protein tyrosine and serine/threonine kinase 570 837 IPR001245 GO:0004672|GO:0006468
Trre15g00496 873 PANTHER OS07G0107800 PROTEIN-RELATED 27 841 - -
Trre15g00496 873 SUPERFAMILY Protein kinase-like (PK-like) 550 837 IPR011009 -
Trre15g00496 873 CDD STKc_IRAK 574 839 - -
Trre15g00496 873 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 644 850 - -
Trre15g00496 873 FunFam Leucine-rich repeat receptor-like protein kinase 543 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00496 Trre-Chr15 3522619 3527258 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00496 2 842 Receptor kinase-like Gene Family AT2G19210 44.148 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre15g00496 Malectin_like 1.2e-99 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00496 - - mtr:25500366 1130.16