Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00489 ATGTTACTGCATTTACTTTCAGTATTGCTTGGTGTCCTTGCTATTTTGGTTTTGATACAAGCTCAAGAACCAGGATTCATTAGCTTAGATTGTGGTCTACCGGAACATTTGAACTATTCTGCGGTGATTACAGGCATAAATTACATATCAGATGCCAAATTCATAGATTCTGGTGTAAGTAAGAGGGTACAAGGCAATATTACCGGTAAACAGCAACTAGAATATGTGAGAAGTTTTCCTACTGGAGTGAAAAATTGTTATAGAATAAGTGTAACAAATGGTACTAAATATTTAATAAGAGCTTCTTTCTATCATGGTAACTATAGCTATGATGATTTAAATGCTCCACCACAATTTGATCTTACTTTTGGAGCTAATGTTTGGGATACAGTGAAAGTCACCAATTTATCACGAATCATAATGAGTGAGATCATTTACACTCCATCACTAGATTACATACAACCATGTCTTGTTAACACTGGCAAAGGGACTCCATTCATATCAGCTATAGAATTGAGGCCTTTGAACAAAGAAGCTTATGTTTCATATTCAGAAAAAGCAATACTATCACTCTTCTTTCGATTTGATATAGGTTCCATCACAAACTTAGAATACAGGTACAAAGATGACGTTTATGACCGCATTTGGCGACCTTTTCCATGGAATGAGATGAAACAATTAAGCACCGATGATGATCTATTAACTCAGAGTATATTTAAAGCACCAGCAATTGTTATGAGCACTGCTATTACACCTGTAAATATCAGTGCCCCTGTACAATTTAGTTTTGATGCAGAAAATGAAAATGTAAAGGACCAATACTACACATATTTGCACTTTAATGAGGTTGAGAAGCTTGCAGATAATGAAACTAGAGAATTCAACATCACAGTGAATGGAGAGCCTTTGTTTGAATTTGAGATACCTGTATACCGGTCAGCCGATACCATATTTAGTGCAATACCTTTGACTGGAGCCACAAAATATATATTTACCCTTTCTAAGACAGAGAATTCAACCCTTCCACCCATCCTCAATGGCTTTGAGGTTTATAAAGTAAAAGACTTCTCACGGTCCGAAACTCAACAAGGCGATGTTGATACTATCACAAACATCAAGAATGCTTATGGAGTGGCTAGAAATTGGCAAGGAGATCCATGTAGTCCTGTGAAATATATGTGGGAAGGCTTAAACTGCAGTATTGATGATGGCAATAACCCTCCAAGAATCACATCTTTGAATTTGTCTTCAAGTGGTTTGACAGGGCAAATAGCATCTTCCATATCAAAACTTACCATGTTACAATACTTGGATTTATCAAATAATAGCTTAAACGGTACTCTACCGGATTTTCTTACGCAACTGCAATCACTAAAAGTATTAAACCTGGGGAAGAACAAACTTACAGGGTTAGTTTCAAGTGAACTCCTTGAGAGATCAAAAACAGGTTCACTATCACTAAGTGTGGAAGATAATCCTGGTCTATGTACGACAGAAACATGCAAAAAGAAGAAGAAGAATTCATTGTCTGTACCACTTATTGCATCATTTTCAGCATTAATTGTAATCCTCTTGATTTCTTTTGGACTTTGGAGATTCAGAAGACAAAAAGTTGTAGCCACGTCTTCAAATTCTAAGAAAAAAGGTTCCATGAAATCCAAACATCAAGCATTCAGCTACACTGAACTTGTCAATATTACTGATAACTTCAAAACTATTATTGGAGAAGGAGGATTTGGAAAAGTTTACTTAGGCACACTACAAGATCAAACTCAAGTAGCTGTTAAGAGGCTTTCACCTTCATCAGTACAAGGTTATAAGGAATTTCAATCAGAGGCACAACTTCTAACGATTGTTCATCATAGAAATTTGGTCTCCCTCATTGGATATTGTGATGAAGGTGAAATCAAAGCATTGGTTTATGAATACATGGCCAGTGGAAATCTCCAGCAACTCTTATTAGTGGAAAATTCAAATATCTTAAAATGGAATCAGAGAATTAACATTGCAGTTGATGCATCACACGGACTGGATTATCTGCATAATGGATGTAAACCACCTATTATGCATAGAGATTTGAAGCCTTCCAACATATTACTAGATGATAACTTGCATGCCAAGATTGCCGATTTTGGTCTAAGTAGAACTTTTAACGATAACGACACTCATATATCAACGCGCCTTGCTGGTACATTCGGTTACATTGATCCTGAATGTCAGAGAACAGGAAACACAAATAAAATAAATGATATCTATAGCTTTGGGATAATTTTATTTGTGTTGATCACCGGTCGTCAAGCAATAGTAAGAACGGATGAACAAAGCATTCACATACTTGAATGGGTTACTCCTATAATCAGAGCAGGCGATATTGAAAATGTTGTTGATCCAAAGTTGAAGGGTGAATTCAACATCAATTCTGCATGGAAAATAGTTGAGATAGCAATGTTATGCACTTCAAGAAATGTTGATGAAAGGCCAGACATCAGAAAAATATTGGCAGAGCTAAATGAATGTTTATCTTTGGAGATGGTTAAGAGAAATAATGGAAGAGAAAGAGCTGTAGTTGAATCTACTTCATTAAATGATCTATCACAAACGGCTCCCTTTGCTAGGTAA 2619 0.3601 MLLHLLSVLLGVLAILVLIQAQEPGFISLDCGLPEHLNYSAVITGINYISDAKFIDSGVSKRVQGNITGKQQLEYVRSFPTGVKNCYRISVTNGTKYLIRASFYHGNYSYDDLNAPPQFDLTFGANVWDTVKVTNLSRIIMSEIIYTPSLDYIQPCLVNTGKGTPFISAIELRPLNKEAYVSYSEKAILSLFFRFDIGSITNLEYRYKDDVYDRIWRPFPWNEMKQLSTDDDLLTQSIFKAPAIVMSTAITPVNISAPVQFSFDAENENVKDQYYTYLHFNEVEKLADNETREFNITVNGEPLFEFEIPVYRSADTIFSAIPLTGATKYIFTLSKTENSTLPPILNGFEVYKVKDFSRSETQQGDVDTITNIKNAYGVARNWQGDPCSPVKYMWEGLNCSIDDGNNPPRITSLNLSSSGLTGQIASSISKLTMLQYLDLSNNSLNGTLPDFLTQLQSLKVLNLGKNKLTGLVSSELLERSKTGSLSLSVEDNPGLCTTETCKKKKKNSLSVPLIASFSALIVILLISFGLWRFRRQKVVATSSNSKKKGSMKSKHQAFSYTELVNITDNFKTIIGEGGFGKVYLGTLQDQTQVAVKRLSPSSVQGYKEFQSEAQLLTIVHHRNLVSLIGYCDEGEIKALVYEYMASGNLQQLLLVENSNILKWNQRINIAVDASHGLDYLHNGCKPPIMHRDLKPSNILLDDNLHAKIADFGLSRTFNDNDTHISTRLAGTFGYIDPECQRTGNTNKINDIYSFGIILFVLITGRQAIVRTDEQSIHILEWVTPIIRAGDIENVVDPKLKGEFNINSAWKIVEIAMLCTSRNVDERPDIRKILAELNECLSLEMVKRNNGRERAVVESTSLNDLSQTAPFAR 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00489 872 Gene3D Ribonuclease Inhibitor 367 490 IPR032675 -
Trre15g00489 872 SUPERFAMILY Protein kinase-like (PK-like) 550 836 IPR011009 -
Trre15g00489 872 ProSiteProfiles Leucine-rich repeat profile. 457 478 IPR001611 GO:0005515
Trre15g00489 872 CDD STKc_IRAK 574 838 - -
Trre15g00489 872 Gene3D Phosphorylase Kinase; domain 1 539 643 - -
Trre15g00489 872 FunFam Leucine-rich repeat receptor-like kinase 364 498 - -
Trre15g00489 872 PANTHER OS07G0107800 PROTEIN-RELATED 27 840 - -
Trre15g00489 872 ProSitePatterns Serine/Threonine protein kinases active-site signature. 688 700 IPR008271 GO:0004672|GO:0006468
Trre15g00489 872 Gene3D Transferase(Phosphotransferase) domain 1 644 861 - -
Trre15g00489 872 ProSitePatterns Protein kinases ATP-binding region signature. 574 596 IPR017441 GO:0005524
Trre15g00489 872 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 644 849 - -
Trre15g00489 872 PRINTS Leucine-rich repeat signature 434 447 - -
Trre15g00489 872 PRINTS Leucine-rich repeat signature 455 468 - -
Trre15g00489 872 Pfam Leucine rich repeat 408 468 IPR001611 GO:0005515
Trre15g00489 872 Pfam Protein tyrosine and serine/threonine kinase 570 836 IPR001245 GO:0004672|GO:0006468
Trre15g00489 872 SMART serkin_6 568 840 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00489 872 ProSiteProfiles Protein kinase domain profile. 568 840 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00489 872 SUPERFAMILY L domain-like 392 488 - -
Trre15g00489 872 FunFam Leucine-rich repeat receptor-like protein kinase 545 643 - -
Trre15g00489 872 Pfam Malectin-like domain 29 353 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00489 Trre-Chr15 3479777 3487687 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00489 2 848 Receptor kinase-like Gene Family AT1G05700 44.870 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre15g00489 Malectin_like 6.9e-99 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00489 - - mtr:25500366 1089.33