LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g00488	ATGTTACTGCATTTTCTTTCAGTATTGCTTGGTGTCATTACTATTTTTGTTTTGATACAAGCTCAAGAACCAGGATTCATTAGTTTAGATTGTGGTCTACCAGAAGATTCTACCTATTCTGAGCAGATTACAGACATAAATTACATATCTGATGCCAAATTCATTGATACAGGTGCAAGTGAGAGGGTTCGAGCCAATATTACTGTTAAACGACAACTAGAATATGTGAGGAGTTTTCCTATTGGAATGAAAAATTGTTACAGAATAGATGTAACAAATGGTACTAAATATTATATCAGAGCTTCTTTCTATTATGGTAACTATGATGGTTTAAATGATCCACCACAATTTGATCTTACTTTTGGAGCTAATGTTTGGGATACAGTGTCATTCAGCAATTTATCTAGCATCGAAACTAGTGAGATCATTTACACGCCATCACTAGATTACATACAACCATGTCTTGTTAATATAGGCGAAGGGACTCCATTCATTTCATCTATAGAATTGAGGCCTTTAAACAAAGAAACTTATGTTTCATATTCAGAAAAATCAATATTATCATTCTTCTTTCGGTTTGATGTAGGTTCCATCACAAAGATAGAATACAGGTACAAAGATGATGTTTATGACCGCATCTGGTTACCTTTTCAGTGGAATGCGATGAAACAATTAAGCACTGATGAAGATCTATTAACACAGAATGTTTATCAACCACCAGCAATTGTTATGAAAACTGCCGTTACACCAGTAAATGACAGTGCCCCTGTACAATTTACTTTTAATGCAGATACTGTAAATCAGCAAATCTACACATATTTGCACTTTAATGAGGTTGAGAAGCTGGCGGAAAATGAAACTAGAGCATTCAACATCAAAGTGAATGGAGAGCTTTTGTATGATCTTGTGGTACCTGTATACCGATCAGCTGATACCATATTTAGTCCAATACCTTTGACTGGAGCCACAACATATATATTTACCCTTACTAAGACAGAGAATTCAACTCATCCACCCATCCTCAATGGCGTTGAGGTTTATAAAGTAAAAAACTTCTCACAATCTGAAACTCAACAGGATGATGTTGATACTATCACAAACATCAAGAAAGCTTATGGGGTGGCTAAAAATTGGCAAGGAGATCCATGTGGTCCTATCAAGTATATATGGGAAGGCCTAAAATGTAGTATTGATGATGGCAATAAACCTCCAAGAATCACATCTTTGAATTTGTCTTCAAGTGGATTGACTGGGGAGATAGCATCTTCCATATCAAACCTCACAAAGTTACAATACTTGGATTTGTCAAATAATAGCTTAAACGGTCCTTTACCGGATTTTCTTACGCAACTGCAATCACTAAAAGTCTTAAATGTGAGCAAGAACAATCTTACAGGGTTAGTTTCAAGTGGACTCCTAGAGAGATCAAAAGCAGGTTCATTATCACTAATTATGGAAGATAACCCTGGTCTTTGTACACCAGAATCATGCAAGGAAAATACGAAGAAGAAGAAGAAGAATTTGTCTATACCACTTATTGCATCATTTTCAGCATTAATTGTAATCCTCGTGATTTCTCTTGGACTTTGGAGATTCAAAAGACAAAAAGCTACGCCTACGCCTGTGTCTTCAAATTCTAAGAAAAAGGGTCCCATGAAAACAAAACATCAAGCATTCAGTTACACTGAACTTGTCAGTATTACTGATAACTTCAAAACTATTATTGGGGAAGGAGGATTTGGAAAAGTTTACTTTGGCACTCTACAAGATCAAACTCAAGTCGCTGTTAAGAGGCTTTCACCTTCATCAGTGCAAGGCTATAAGGAATTTCAATCAGAGGCACAACTTCTAACGATAGTTCATCATAGAAATTTGGTCTCTCTAATTGGATATTGTGATGAAGGTGAAACCAAAGCATTGATTTATGAATACATGGCCAATGGAAATCTCCAACAACTTTTACTAGTGGAAAATTCAAATATCTTAAAATGGAATGAGAGACTAAACATTGCAGTTGATGCAGCACATGGACTGGATTATCTGCATAATGGATGTAAACCACCTATTATGCATAGAGATTTGAAACCTTCCAACATATTACTAGATGATAACATGCATGCCAAGATAGCAGATTTCGGGCTAAGTAGAACTTTTAACGATAACGACACTCATATATCAACGCGCCTTGCTGGTACATTTGGTTACATTGATCCTGAATGTCAGAGAACAGGAAACACAAATAAAATAAATGATATCTATAGCTTTGGAATAATTTTATTTGTGTTGATCACCGGTCGTCAAGCAATAGTAAGAACAGCTGAACAAAGCATTCACATAATTGAATGGGTTACTCCTATAATCAGAGCAGGTGATATCGAAAATGTTGTTGATCCAAAGTTGAAGGGTGAATTCAACATCAGTTCTGCATGGAAAATTGTTGAGATAGCAATGTTATGCACTTCAAGAAATGTTGATGAAAGGCCAGACATTAGAAAAATATTGGCAGAGCTAAATGAATGTCTATCTTTGGAGATGGTTCAGAGAAATAATGGAAGAGAAAGAGCTATAGATGAATCTACTTCTATAAATGATCTATCGCAAACGGTTCCTTTTCCAAGGTAA	2622	0.357	MLLHFLSVLLGVITIFVLIQAQEPGFISLDCGLPEDSTYSEQITDINYISDAKFIDTGASERVRANITVKRQLEYVRSFPIGMKNCYRIDVTNGTKYYIRASFYYGNYDGLNDPPQFDLTFGANVWDTVSFSNLSSIETSEIIYTPSLDYIQPCLVNIGEGTPFISSIELRPLNKETYVSYSEKSILSFFFRFDVGSITKIEYRYKDDVYDRIWLPFQWNAMKQLSTDEDLLTQNVYQPPAIVMKTAVTPVNDSAPVQFTFNADTVNQQIYTYLHFNEVEKLAENETRAFNIKVNGELLYDLVVPVYRSADTIFSPIPLTGATTYIFTLTKTENSTHPPILNGVEVYKVKNFSQSETQQDDVDTITNIKKAYGVAKNWQGDPCGPIKYIWEGLKCSIDDGNKPPRITSLNLSSSGLTGEIASSISNLTKLQYLDLSNNSLNGPLPDFLTQLQSLKVLNVSKNNLTGLVSSGLLERSKAGSLSLIMEDNPGLCTPESCKENTKKKKKNLSIPLIASFSALIVILVISLGLWRFKRQKATPTPVSSNSKKKGPMKTKHQAFSYTELVSITDNFKTIIGEGGFGKVYFGTLQDQTQVAVKRLSPSSVQGYKEFQSEAQLLTIVHHRNLVSLIGYCDEGETKALIYEYMANGNLQQLLLVENSNILKWNERLNIAVDAAHGLDYLHNGCKPPIMHRDLKPSNILLDDNMHAKIADFGLSRTFNDNDTHISTRLAGTFGYIDPECQRTGNTNKINDIYSFGIILFVLITGRQAIVRTAEQSIHIIEWVTPIIRAGDIENVVDPKLKGEFNISSAWKIVEIAMLCTSRNVDERPDIRKILAELNECLSLEMVQRNNGRERAIDESTSINDLSQTVPFPR	873

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g00488	873	PANTHER	OS07G0107800 PROTEIN-RELATED	27	841	-	-
	Trre15g00488	873	PRINTS	Leucine-rich repeat signature	430	443	-	-
	Trre15g00488	873	PRINTS	Leucine-rich repeat signature	451	464	-	-
	Trre15g00488	873	FunFam	Leucine-rich repeat receptor-like kinase	360	493	-	-
	Trre15g00488	873	SUPERFAMILY	L domain-like	402	511	-	-
	Trre15g00488	873	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	689	701	IPR008271	GO:0004672\|GO:0006468
	Trre15g00488	873	ProSitePatterns	Protein kinases ATP-binding region signature.	575	597	IPR017441	GO:0005524
	Trre15g00488	873	FunFam	Leucine-rich repeat receptor-like protein kinase	547	644	-	-
	Trre15g00488	873	Gene3D	Phosphorylase Kinase; domain 1	542	644	-	-
	Trre15g00488	873	Pfam	Protein tyrosine and serine/threonine kinase	571	837	IPR001245	GO:0004672\|GO:0006468
	Trre15g00488	873	Pfam	Leucine rich repeat	404	464	IPR001611	GO:0005515
	Trre15g00488	873	Gene3D	Ribonuclease Inhibitor	362	481	IPR032675	-
	Trre15g00488	873	Pfam	Malectin-like domain	29	349	IPR024788	-
	Trre15g00488	873	CDD	STKc_IRAK	575	839	-	-
	Trre15g00488	873	Gene3D	Transferase(Phosphotransferase) domain 1	645	863	-	-
	Trre15g00488	873	SUPERFAMILY	Protein kinase-like (PK-like)	552	837	IPR011009	-
	Trre15g00488	873	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	645	850	-	-
	Trre15g00488	873	ProSiteProfiles	Protein kinase domain profile.	569	841	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g00488	873	SMART	serkin_6	569	841	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g00488	Trre-Chr15	3473523	3477804	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g00488	13	849	Receptor kinase-like Gene Family	AT1G05700	45.423	0.0	738

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Trre15g00488		Malectin_like	9.5e-102	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g00488	-		-	mtr:25500366	1097.03