Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00480 ATGACAAAATCCTGCAAAAAGAAGAATTTGTCTGTACCACTAATTTCATCATTTTCGGTATTAGTTGTTTCAATCCTCTTGATTGCTTTGGGATTTCTGATATTCAGAAGAAGACAAAAAGTTACGTCTACAAATTCTAAGAAAAAGAATTCAATGAAATCAAAGCATCAAACATTCAGTTACACAGAAATTCTCAATATTACTGATAACTTCAACACTATTATTGGAGAAGGAGGATTCGGAAAAGTTTATCTTGGTGTCCTACAAAATCACACCCAAGTTGCGGTTAAGATACTTTCACCATCTTCCATGCAAGGTTATAAGGAATTTCAATCCGAGGCACAACTTCTAATGATTGTTCATCATAGAAATTTGGTCTCTCTTATTGGGTATTGTGATGAAGGTGAAATGAAAGCATTAATTTATGAATACATGGCTAATGGAAATCTCCAACAACACTTATTAGTAGAAAATCCAAATATCTTAAAATGGAGTGAGAGACTTAACATTGCAGTTGATGCAGCACACGGATTGGAATATCTGCATAATGGATGTAAACCACCTATTATGCATAGAGATTTGAAACCTTCCAACATATTACTAGATGATAACATGCATGCCAAGATTGCTGATTTTGGTCTAAGTAGAGCTTTTGGTGATGATATTGATTCTCATATATCCACGCGCCCTGCCGGTACACTTGGTTATGCTGATCCGGAATTTCAGAGAGCCGGGAATACAAATAAAAAAAACGATGTCTACAGCTTTGGAGTGGTTTTATTTGTGTTGATTACTGGTCGCCAAGCAATAGTAAGAGCAGGTGGAAAAAACATTCACATACTTGAATGGGTTATTCCTATAATCAAAAGAGGAGATATTGAAAATGTTATTGATCCAAGATTGGAGAGTGAATTCAGCATCAATTCAGCATGGAAAGTTGTAGAGATTGCCATGACATGCATTTCACCAAATGCCGCTGAAAGGCCGGACATTAGCCAAATATTGGCTGAGCTGAAGGAGTCTCTATCTTTGGAGATGGTCCAGAAACACGGAGAAAATGCAATTGAATTGGCTTCATCACTATTTCAATCAGTAACCGCTCCCATGCCTAGGTAA 1116 0.3665 MTKSCKKKNLSVPLISSFSVLVVSILLIALGFLIFRRRQKVTSTNSKKKNSMKSKHQTFSYTEILNITDNFNTIIGEGGFGKVYLGVLQNHTQVAVKILSPSSMQGYKEFQSEAQLLMIVHHRNLVSLIGYCDEGEMKALIYEYMANGNLQQHLLVENPNILKWSERLNIAVDAAHGLEYLHNGCKPPIMHRDLKPSNILLDDNMHAKIADFGLSRAFGDDIDSHISTRPAGTLGYADPEFQRAGNTNKKNDVYSFGVVLFVLITGRQAIVRAGGKNIHILEWVIPIIKRGDIENVIDPRLESEFSINSAWKVVEIAMTCISPNAAERPDISQILAELKESLSLEMVQKHGENAIELASSLFQSVTAPMPR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00480 371 PIRSF ILK 22 355 - -
Trre15g00480 371 Pfam Protein tyrosine and serine/threonine kinase 71 338 IPR001245 GO:0004672|GO:0006468
Trre15g00480 371 Gene3D Transferase(Phosphotransferase) domain 1 145 360 - -
Trre15g00480 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Trre15g00480 371 SUPERFAMILY Protein kinase-like (PK-like) 49 338 IPR011009 -
Trre15g00480 371 ProSiteProfiles Protein kinase domain profile. 69 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00480 371 CDD STKc_IRAK 75 340 - -
Trre15g00480 371 ProSitePatterns Protein kinases ATP-binding region signature. 75 97 IPR017441 GO:0005524
Trre15g00480 371 FunFam Leucine-rich repeat receptor-like protein kinase 46 144 - -
Trre15g00480 371 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 145 351 - -
Trre15g00480 371 PANTHER OS07G0107800 PROTEIN-RELATED 5 342 - -
Trre15g00480 371 Gene3D Phosphorylase Kinase; domain 1 41 144 - -
Trre15g00480 371 SMART serkin_6 69 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00480 Trre-Chr15 3428137 3433039 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00480 6 371 Receptor kinase-like Gene Family AT1G51830 44.531 9.59e-113 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre15g00480 PK_Tyr_Ser-Thr 3.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00480 - - mtr:25500366 530.02