Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00478 ATGATGAGAATGTTACAGCATTTTCTTTCAGTATTGTTTGGTGTCTTTACTAGTATTTTGGTTTTGATACAAGCTCAAGATCAATCAGGATTCATAAGCTTGGATTGTGGTCTACCTGAAGATGTGAGCTATTCTTCATCGGAGACAGGCATAAATTACATTTCAGATGCAAAATTCATAGATACAGGTGTAAGTAAGAGGGTACAAGGCAATATTAATATTAAACAGCAACTAGAATATGTGAGGAGTTTTCCAATTGGAGTGAGAAATTGTTACAAAATAAATGTAACAAGTGGTACTAAATATTTAATCAGAACTTTATTCTACTATGGAAACTATGATAATCAAAATAAGCCACCACAATTTGATCTTCATGTTGGAGCTAATATGTGGGATACAGTGAAGTTCACCAATTTATCACGCATCGCAATCAATGAGATAATTTACATTCCATCACAAGATTACATACAACTATGTCTTGTTAACACTGGCAAAGGGACTCCATTCATTTCAGCTATAGAACTGAGGCCTTTGAACAATGATGCTTATGTCACACAAGCTAAATCAGTATTATTAGCATTCTTAAGATTGGATGTTGGTTCCATCTCAAAATCAGACTACAGGTACAAAGATGATGTTTGTGACCGCGAATGGTTTCCTTTTAAATTCTCCGATGATATGAAAAGATTAAACACATCACTTAAAAATGATGATCTAGGTCAGGAAGATTATGAACTACCAGCAAGTGTAATGAGCACTGCTGGTACACCAGTAAATGTCAGTGCCCCTTTACAAACACTTTGGAATGCAGATAATGTAAATGACCAGTACTACCTCTACTTGCACTTTAATGAGGTTGAAGAGTTAGCAGCAAATGAAACTAGAGCTTTCAATATCACAGTGAATGGAGATTTTTTGTATGGACTTGAGATACCTATATACCAGAAAGCAAGTACCATATTTAGTAAAACACCTTTGACTGGAGCCACAAGCTATGAACTTTCCCTTACTAAGACACAGAATTCAACTCTTCCGCCCATCCTTAATGCCATTGAGGTTTATAAACTAAAGGATTTCTCACAATCTGAAACTCAACAGAATGATGTTGATACTATTACAAACATCAAGAATGCATATGGGGTGGCTAGGAATTGGCAAGGAGATCCATGTGCTCCTGTGAAATATATGTGGGAAGGCTTAAACTGCAGTATTGATGATGGCAACAACCCTCCAAGAATCACATCTTTGAATTTGTCATCAAGTGGATTGACAGGAGAGATAGCATCTGCCATATCAAAGCTCACAAAGTTACAATACTTGGATTTATCAAACAATAGCTTAAATGGTCCCTTACCTGATTTTCTGTTACAACTGCATTCACTAAAAGTCTTAAAAGTGGGGAAGAACAAACTCACAGGGTTAGTTCCAAGTGGACTTCATGAGCGATCAAAATCCGGTTCACTATCATTGAGCGTGGATGATAATTCTGGTCTTTGTATGACGAAATCCTGCAAAAAGAAGAGTTTGCTTGTACCACTAATTGCATCAATTGCAGCATTAATTTTTGTAATCCTCTTGATTTCTCTTACATTATGGATATTCAAAAGACAAAAAGTTAAGTCTACAAATTCTAAGAAAAGGGGTTCATTTGAATCAAAACATCAAGCATTCAGTTATACTGAAGTTCTCAATATTACTGATAACTTCAAAACTATTATTGGAGAAGGAGGATTTGGAAAAGTTTATGTTGGTATTCTACAAAATCACACGCAAGTTGCGGTTAAGATACTTTCACCATCCTCAATGCAAGGTTATAAAGAATTTCAATTAGAGGCACAACTTCTAATGATTGTTCATCATAGAAATTTGGTCTCTCTCATTGGATATTGTGATGACGGTGAAATCAAAGCATTGATTTATGAATACATGGCCAAAGGAAATCTCCATCAACACTTATTAGTGAAAAATAAAAATATCTTAACATGGAATGAGAGGCTTAACATTGCAGTTGATGCCGCACACGGATTGGATTATCTGCATAATGGATGTAAACCACCTATTATGCATAGAGATTTGAAACCTTCCAACATATTACTAGATGATAACATGCATGCCAAAATTGCTGATTTTGGTCTAAGTAGAACTTTTGCTAATGATGTTGATTCTCATATATCCACACGCCCTGCCGGTACATTTGGTTACGCTGATCCTGAATTTATGAGAACAGGAAAGACAAATATACAAAATGATGTGTACAGCTTTGGCATAGTTCTATTTGTGTTGATCACTGGTCGTCAAGCAATAGTAAGAGAAGATGAAAAAAACATTCACATACTTGAATGGGTTATTCCTATAATCGAAGAAGGAGATATTCAAAATGTTATCGATCCAAAGTTGCAGGGTGAATTTAGCATTAATTCAGCATGGAAAGCTATAGAGATTGCCATGTCTTGCACTTCACCAAATGCAGTTGTAAGGCCAGATGCTCACCAAATATTGGCAGAGTTAAAGGAATGTTTGTCTTTGGATATGGTTCAGAGAAACTGTGGAAACACAAGTGCTATAGATGGATTGGTTTCTGTAGCTACTGTATCTGAAACCATTATTTTAGCTAGATAA 2619 0.3562 MMRMLQHFLSVLFGVFTSILVLIQAQDQSGFISLDCGLPEDVSYSSSETGINYISDAKFIDTGVSKRVQGNINIKQQLEYVRSFPIGVRNCYKINVTSGTKYLIRTLFYYGNYDNQNKPPQFDLHVGANMWDTVKFTNLSRIAINEIIYIPSQDYIQLCLVNTGKGTPFISAIELRPLNNDAYVTQAKSVLLAFLRLDVGSISKSDYRYKDDVCDREWFPFKFSDDMKRLNTSLKNDDLGQEDYELPASVMSTAGTPVNVSAPLQTLWNADNVNDQYYLYLHFNEVEELAANETRAFNITVNGDFLYGLEIPIYQKASTIFSKTPLTGATSYELSLTKTQNSTLPPILNAIEVYKLKDFSQSETQQNDVDTITNIKNAYGVARNWQGDPCAPVKYMWEGLNCSIDDGNNPPRITSLNLSSSGLTGEIASAISKLTKLQYLDLSNNSLNGPLPDFLLQLHSLKVLKVGKNKLTGLVPSGLHERSKSGSLSLSVDDNSGLCMTKSCKKKSLLVPLIASIAALIFVILLISLTLWIFKRQKVKSTNSKKRGSFESKHQAFSYTEVLNITDNFKTIIGEGGFGKVYVGILQNHTQVAVKILSPSSMQGYKEFQLEAQLLMIVHHRNLVSLIGYCDDGEIKALIYEYMAKGNLHQHLLVKNKNILTWNERLNIAVDAAHGLDYLHNGCKPPIMHRDLKPSNILLDDNMHAKIADFGLSRTFANDVDSHISTRPAGTFGYADPEFMRTGKTNIQNDVYSFGIVLFVLITGRQAIVREDEKNIHILEWVIPIIEEGDIQNVIDPKLQGEFSINSAWKAIEIAMSCTSPNAVVRPDAHQILAELKECLSLDMVQRNCGNTSAIDGLVSVATVSETIILAR 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00478 872 CDD STKc_IRAK 573 838 - -
Trre15g00478 872 PANTHER OS07G0107800 PROTEIN-RELATED 32 840 - -
Trre15g00478 872 Pfam Leucine rich repeat 411 471 IPR001611 GO:0005515
Trre15g00478 872 ProSitePatterns Protein kinases ATP-binding region signature. 573 595 IPR017441 GO:0005524
Trre15g00478 872 SUPERFAMILY L domain-like 397 497 - -
Trre15g00478 872 ProSiteProfiles Protein kinase domain profile. 567 840 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00478 872 SUPERFAMILY Protein kinase-like (PK-like) 547 836 IPR011009 -
Trre15g00478 872 FunFam Leucine-rich repeat receptor-like kinase 367 500 - -
Trre15g00478 872 ProSitePatterns Serine/Threonine protein kinases active-site signature. 687 699 IPR008271 GO:0004672|GO:0006468
Trre15g00478 872 Gene3D Transferase(Phosphotransferase) domain 1 643 854 - -
Trre15g00478 872 Pfam Protein tyrosine and serine/threonine kinase 569 834 IPR001245 GO:0004672|GO:0006468
Trre15g00478 872 FunFam Leucine-rich repeat receptor-like protein kinase 543 642 - -
Trre15g00478 872 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 643 848 - -
Trre15g00478 872 Gene3D Ribonuclease Inhibitor 369 492 IPR032675 -
Trre15g00478 872 Gene3D Phosphorylase Kinase; domain 1 548 642 - -
Trre15g00478 872 SMART serkin_6 567 840 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00478 872 Pfam Malectin-like domain 34 355 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00478 Trre-Chr15 3410636 3416676 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00478 7 856 Receptor kinase-like Gene Family AT2G19210 45.675 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre15g00478 Malectin_like 1e-108 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00478 - - mtr:25500366 1195.65