Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00461 ATGGGAAAAGCTAGTAGGTGGTTGAAGAATTTGTTAGTTGGAAACAAGAAAAAGGAAAAGGAGAAGGACCACAACAATGACATTAATTCAGGTTTCATGACACCTGACAATAACAACAAAAAGGAGAAGAAAAGATGGAGTTTTGCAAAACAAGGGAAGAATGTGGAAGTGGAAGTTGAGGAACCAAAAATTACTCAAACTTCATCTTCTGATACTTCTTGGCTCAGATCCTATATTGCTGATACAGAAAATCAGCAGAACAAACATGCAATTGCTGTTGCAGCTGCTACGGCAGCCGCTGCCGATGCCGCTGTTGCCGCCGCTCAGGCTGCTGTCGCGGTTGTTAGGCTAACTAGTCATGGAAGAGGTACATTGTTTAGTGGAAGTAGGGAGAAATGGGGTGCTGTAAAGATCCAAACTTTCTTCAGAGGCTATTTGGCAAGGAAAGCTCTTAGAGCATTGAAAGGATTGGTTAAGATTCAAGCTCTTGTTAGAGGATATCTTGTTAGAAAAAGAGCTGCTGCTACTCTTCACAGTATGCAAGCTCTATTCAGAGCTCAAACTTCTGTTAGAACACAAAGAGCTCGTCGTTCCATGAGCAAAGAAAATCGATTCCTACCTGAAATTCTTGCAAGAAAATCTATGGAACGATTTGATGAAACAAGGAGTGAGTTCCACAGCAAAAGATTACCGACGTCATATGAAACATCAATGAATGGGTATGATGATCAAAGTCCAAAGATTGTTGAAATTGACACATACAAGACAAGAACAAAATCTAAGAGATTTACCTCAACAATGTCTGAATGTGGAGAAGAATTACCACATTGTCACACAATTTCATCATCACCTCTTCCAGGTAGAATCTCAATTCCAGCTGATTGTAGAAATCATCATCATCATCATCATCAACAACAACAACAAGACTTTGATTGGTATTTCAACAATCTTGAAGATTCAAGGTACCCTACAACACATAACACACCGCGTTTCAATCATTCATCTATGCGTCCAAATATCGCTCCAAATACACCATCAAAGAGTGTTTGTGGTGACACTTTCTTTAGACCTTATTATTACTCAAATTTCCCTAATTACATGGCTAATACTCAGTCATTTAAGGCTAAATTAAGGTCTCATAGTGCACCTAAACAAAGACCTGAAGTCAAGAAAAGACTTTCACTCAATGAAATGATGGCTGCAAGAAACAGTATGAGTGGTGTTAGAATGCAAAAGCCACCATCTTCAAATTTTCAGACACAACATGAAGAAGAATCTTGGAATTCTTGA 1290 0.3884 MGKASRWLKNLLVGNKKKEKEKDHNNDINSGFMTPDNNNKKEKKRWSFAKQGKNVEVEVEEPKITQTSSSDTSWLRSYIADTENQQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTLFSGSREKWGAVKIQTFFRGYLARKALRALKGLVKIQALVRGYLVRKRAAATLHSMQALFRAQTSVRTQRARRSMSKENRFLPEILARKSMERFDETRSEFHSKRLPTSYETSMNGYDDQSPKIVEIDTYKTRTKSKRFTSTMSECGEELPHCHTISSSPLPGRISIPADCRNHHHHHHQQQQQDFDWYFNNLEDSRYPTTHNTPRFNHSSMRPNIAPNTPSKSVCGDTFFRPYYYSNFPNYMANTQSFKAKLRSHSAPKQRPEVKKRLSLNEMMAARNSMSGVRMQKPPSSNFQTQHEEESWNS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00461 429 PANTHER IQ-DOMAIN 5-RELATED 1 396 - -
Trre15g00461 429 SMART iq_5 153 174 IPR000048 GO:0005515
Trre15g00461 429 SMART iq_5 130 152 IPR000048 GO:0005515
Trre15g00461 429 MobiDBLite consensus disorder prediction 403 429 - -
Trre15g00461 429 ProSiteProfiles IQ motif profile. 131 159 IPR000048 GO:0005515
Trre15g00461 429 Pfam IQ calmodulin-binding motif 134 152 IPR000048 GO:0005515
Trre15g00461 429 Pfam IQ calmodulin-binding motif 158 172 IPR000048 GO:0005515
Trre15g00461 429 Gene3D - 134 172 - -
Trre15g00461 429 MobiDBLite consensus disorder prediction 408 429 - -
Trre15g00461 429 MobiDBLite consensus disorder prediction 1 44 - -
Trre15g00461 429 ProSiteProfiles IQ motif profile. 155 182 IPR000048 GO:0005515
Trre15g00461 429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 173 IPR027417 -
Trre15g00461 429 MobiDBLite consensus disorder prediction 12 27 - -
Trre15g00461 429 Pfam Protein of unknown function (DUF4005) 328 415 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00461 Trre-Chr15 3315001 3317265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00461 1 410 IQD Protein Family AT3G16490 52.267 7.41e-109 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00461 - - gmx:100797686 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00461 15 3315001 3317265 Trre15g00461 15 3315001 3317265 ECH
Trre11g04693 11 58369860 58371630 Trre15g00461 15 3315001 3317265 PCT