Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00458 ATGTGGCAAAAAAGCCACAAGTGTTCTTTAGAGGAGGAGAGGAAATTGGAGCTTAGACTTGGTCCACCTGGTGAAGATGAGTCATACAATGAAAAAAGCATGAAAAATGTCAAAAAAGAAAGAGATGAATCACAACCATGTTGCACAAATTTGACCAACAAGTCTCAAAAAAGAAACGCAACTAGTCCAGTAGTGGGTTGGCCTCCGATTCGTTCTTTCAGGAAGAACATTGCAAGCGGAAGTTCTTCTAAGCCGCCGACCGAGTCACAACACGTTGTTCAAGACAAGGTTGCTGCTAGTAATAAACCTATTAGCAACTCTGGTAAAGGCTTGTTTGTGAAGATCAATATGGATGGAGTTCCCATTGGGAGAAAAGTAGACATCAATGCTTATGATAGCTATGAGAAACTTTCATCTGCTGTTGATGACCTATTTAGAGGTCTCCTTGAAGAGATAAATTTATCTCATAACAACAAGCAAGAGGAAGATAAAGGCATGATGAAAGGTTCATTGATTGGAAGTGGAGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAAGATGCTTGTAGGGGACGTGCCGTGGCACATGTTTGTATCAACCGTGAAGAGGTTGCGAGTGTCCAAGAGTTCTGACCTTCCTGCTTTTAACCGTGAGTTTTAG 666 0.4099 MWQKSHKCSLEEERKLELRLGPPGEDESYNEKSMKNVKKERDESQPCCTNLTNKSQKRNATSPVVGWPPIRSFRKNIASGSSSKPPTESQHVVQDKVAASNKPISNSGKGLFVKINMDGVPIGRKVDINAYDSYEKLSSAVDDLFRGLLEEINLSHNNKQEEDKGMMKGSLIGSGEYTLVYEDNEGDKMLVGDVPWHMFVSTVKRLRVSKSSDLPAFNREF 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00458 221 Gene3D - 105 220 - -
Trre15g00458 221 SUPERFAMILY CAD & PB1 domains 102 209 - -
Trre15g00458 221 ProSiteProfiles PB1 domain profile. 110 211 IPR000270 GO:0005515
Trre15g00458 221 MobiDBLite consensus disorder prediction 75 95 - -
Trre15g00458 221 FunFam Auxin-responsive protein 105 219 - -
Trre15g00458 221 Pfam AUX/IAA family 37 214 IPR033389 -
Trre15g00458 221 MobiDBLite consensus disorder prediction 1 45 - -
Trre15g00458 221 MobiDBLite consensus disorder prediction 46 62 - -
Trre15g00458 221 MobiDBLite consensus disorder prediction 1 62 - -
Trre15g00458 221 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 213 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00458 Trre-Chr15 3283551 3286004 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00458 113 208 B3 DNA Binding Superfamily AT4G23980 35.417 1.75e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre15g00458 AUX_IAA 1.8e-63 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00458 K14484 - gmx:100305794 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00458 15 3283551 3286004 Trre11g04694 11 58393535 58397436 ECH
Trre15g00458 15 3283551 3286004 Trre15g00458 15 3283551 3286004 ECH
Trre11g04694 11 58393535 58397436 Trre15g00458 15 3283551 3286004 PCT