Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00457 ATGTGGCAAAAAAGCCACAAGTGTTCTTTAGAGGAGGAGAGGAAATTGGAGCTTAGACTTGGTCCACCTGGTGAAGATGAGTCATACAATGAAAAAAGCATGAAAAATGTCAAAAAAGAAAGAGATGAATCACAACCATGTTGCACAAATTTGACCAACAAGTCTCAAAAAAGAAACGCAACTAGTCCAGTAGTGGGTTGGCCTCCGATTCGTTCTTTCAGGAAGAACATTGCAAGCGGAAGTTCTTCTAAGCCGCCGACCGAGTCACAACACGTTGTTCAAGACAAGGTTGCTGCTAGTAATAAACCTATTAGCAACTCTGGTAAAGGCTTGTTTGTGAAGATCAATATGGATGGAGTTCCCATTGGGAGAAAAGTAGACATCAATGCTTATGATAGCTATGAGAAACTTTCATCTGCTGTTGATGACCTATTTAGAGGTCTCCTTGAAGAGATAAATTTATCTCATAACAACAAGCAAGAGGAAGATAAAGGCATGATGAAAGGTTCATTGATTGGAAGTGGAGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAAGATGCTTGTAGGGGACGTGCCGTGGCACATGTTTGTATCAACCGTGAAGAGGTTGCGAGTGTCCAAGAGTTCTGACCTTCCTGCTTTTAACCCAGGTAGTAAGAAAGACCAATTGATGCACCACTTGACTCAGAAATGCAAGTGA 708 0.411 MWQKSHKCSLEEERKLELRLGPPGEDESYNEKSMKNVKKERDESQPCCTNLTNKSQKRNATSPVVGWPPIRSFRKNIASGSSSKPPTESQHVVQDKVAASNKPISNSGKGLFVKINMDGVPIGRKVDINAYDSYEKLSSAVDDLFRGLLEEINLSHNNKQEEDKGMMKGSLIGSGEYTLVYEDNEGDKMLVGDVPWHMFVSTVKRLRVSKSSDLPAFNPGSKKDQLMHHLTQKCK 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00457 235 MobiDBLite consensus disorder prediction 1 63 - -
Trre15g00457 235 MobiDBLite consensus disorder prediction 214 235 - -
Trre15g00457 235 FunFam Auxin-responsive protein 105 222 - -
Trre15g00457 235 ProSiteProfiles PB1 domain profile. 110 211 IPR000270 GO:0005515
Trre15g00457 235 Pfam AUX/IAA family 35 215 IPR033389 -
Trre15g00457 235 MobiDBLite consensus disorder prediction 1 45 - -
Trre15g00457 235 MobiDBLite consensus disorder prediction 46 62 - -
Trre15g00457 235 SUPERFAMILY CAD & PB1 domains 102 209 - -
Trre15g00457 235 Gene3D - 105 222 - -
Trre15g00457 235 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 213 IPR003311 GO:0005634|GO:0006355
Trre15g00457 235 MobiDBLite consensus disorder prediction 76 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00457 Trre-Chr15 3282411 3286004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00457 113 230 B3 DNA Binding Superfamily AT4G23980 31.356 4.47e-15 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre15g00457 AUX_IAA 3.1e-63 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00457 K14484 - gmx:100305794 245.358