Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00455 ATGTCAGCTATGAACTGTACGGACACAAGACGTGTTTGTACTTCTTTCTTGGCCTATAAGCCTAAAAAAAACCAATCTTTGGGTGTGATTCAGAGTATGTTTGATGTATTACCAAGTGACATCACAGTTGAAGGAAATGGTTGGGATTATTTATTCATAAGGAAGAATTGTTCTTGTGCATCTGGTATCAAGAAATATGTGTCTAACACTACTTACACTGTGAAATCAAATGATGGATTTGTTGATGATTTGGTTATGGATGCATATGATGGGCTTATTTTGTTACCAAACACTTCAAGGAAAGCAAGGAATGGTGCTGTTATATCATTGAGGTTGTTTTGTGGCTGTTCTAATGGACCGTGGAACTATCTGTTGAGTTATGTGTTGAGAGATGGGGACAGTGTTGAATCTTTGTCTAGTAGATTTGGGGTTAGTATGGATAGTATTGAGGATGTGAATGGTCTTGATGGTCCTGATAATGTTACTGTAGGTTCACTTTATTACATCCCTCTTGATTCTGTTCCTGGTGACCCTTATCCTCTGAATAATGCTTCTCCACCCGCTTCTGTTCCTACTCCTTCTGTTGATAGTTTACCAGGTGATGATGCCAATCATAAGTATCATGTACCCTTTGCATTGATCATTGGTGGTTTAGGAGTCGGTCTTGTTCTGATAATATTAAGCATAGTTCTTTGTGTTTGCCTGAGATCGTCAAATTGTTATTCTGATTCCAGAAGTCATGAGAAAGATGGCGAGGGAAAGGTCTCTCATAAGTTCCATATTCTTCGGAATCCAAGTTTTTTGTGTGGTTCTGGAAGGTACATATGCGGCAAACATGTTGACCACAAGCAAAGAGACGGTGACTCCAGCACTCAAGCAATTACCGTTCCAAAAGCTTCAACTCTAGGGCCGGACGTATTTGATATGGATAAACCTGTAGTTTTTGCATATGAAGAGATTTTTTCGTCAACCGAAGGCTTCTCTGATTCAAATCTACTTGGACATGGAACATATGGATCTGTCTACTATAGCCTCCTTCGCGACCAGGAAGTTGCTATTAAAAGAATGACGGCTACAAAAACAAAAGAATTCACATCAGAGATTAAAGTTTTATGCAAGGTTCACCATGCTAATCTGGTAGAATTGATTGGTTATGCAGCCAGTCATGATGAGCTTTTCCTAGTTTATGAATATGCTCAAAAGGGTTCACTCAGAAGCCATTTGCATGACCCTCAAAATAAGGGTCATTCACCACTATCATGGATCATGAGGGTCCAAATTGCACTTGATGCTGCTAGGGGACTTGAATATATACACGAGCACACAAAAGCTCATTATGTTCATCGAGATATAAAGACAAGCAACATTTTACTTGATGCTTCCTTTAAAGCAAAGATTTCAGATTTTGGATTGGCGAAACTTGTCGGGATAACAAACGAGGGGGATGTTTCAACTACCAAAGTTGTTGGTACATATGGATATCTTGCTCCGGAATACTTGAGTGATGGCCTTGCAACAACCAAAAGTGATGTTTATGCATTTGGTGTTGTTCTTTTTGAGACTATAACCGGAAAGGAGGCCATTATTCGAACAGAAGGCATGATGACAAAAAATCCTGAAAGACGATCACTAGCATCAATAATGTTGGCAGTTCTTAGGAACTCACCTGATTCATTGAGCATGTCAAGCATGAAAGATTACATTGATCCAAATATGATGAATCTGTATCCCCACGATTGTGTATTTAAGATGGCTTTGTTGGCAAAGCAATGTGTGGACGATGATCCGATCTTACGACCAGATATGAAACAAATAGTGATTTCCATCTCACAGATTCTTTTGTCTTCTATTGAGTGGGAAGCAACACTAGCTGGGAATAGCCAAGTATTCAGTGGACTTGTTCAGGGAAGATAG 1914 0.3939 MSAMNCTDTRRVCTSFLAYKPKKNQSLGVIQSMFDVLPSDITVEGNGWDYLFIRKNCSCASGIKKYVSNTTYTVKSNDGFVDDLVMDAYDGLILLPNTSRKARNGAVISLRLFCGCSNGPWNYLLSYVLRDGDSVESLSSRFGVSMDSIEDVNGLDGPDNVTVGSLYYIPLDSVPGDPYPLNNASPPASVPTPSVDSLPGDDANHKYHVPFALIIGGLGVGLVLIILSIVLCVCLRSSNCYSDSRSHEKDGEGKVSHKFHILRNPSFLCGSGRYICGKHVDHKQRDGDSSTQAITVPKASTLGPDVFDMDKPVVFAYEEIFSSTEGFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFTSEIKVLCKVHHANLVELIGYAASHDELFLVYEYAQKGSLRSHLHDPQNKGHSPLSWIMRVQIALDAARGLEYIHEHTKAHYVHRDIKTSNILLDASFKAKISDFGLAKLVGITNEGDVSTTKVVGTYGYLAPEYLSDGLATTKSDVYAFGVVLFETITGKEAIIRTEGMMTKNPERRSLASIMLAVLRNSPDSLSMSSMKDYIDPNMMNLYPHDCVFKMALLAKQCVDDDPILRPDMKQIVISISQILLSSIEWEATLAGNSQVFSGLVQGR 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00455 637 ProSiteProfiles LysM domain profile. 125 169 IPR018392 -
Trre15g00455 637 FunFam PTI1-like tyrosine-protein kinase 3 399 623 - -
Trre15g00455 637 CDD LysM 126 169 IPR018392 -
Trre15g00455 637 SUPERFAMILY Protein kinase-like (PK-like) 306 606 IPR011009 -
Trre15g00455 637 SMART LysM_2 126 170 IPR018392 -
Trre15g00455 637 Pfam LysM domain 127 164 IPR018392 -
Trre15g00455 637 SUPERFAMILY LysM domain 126 170 IPR036779 -
Trre15g00455 637 Pfam Protein tyrosine and serine/threonine kinase 331 606 IPR001245 GO:0004672|GO:0006468
Trre15g00455 637 ProSiteProfiles Protein kinase domain profile. 327 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00455 637 Gene3D Transferase(Phosphotransferase) domain 1 400 623 - -
Trre15g00455 637 Gene3D LysM domain 122 175 IPR036779 -
Trre15g00455 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Trre15g00455 637 SMART serkin_6 327 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00455 637 Gene3D Phosphorylase Kinase; domain 1 303 398 - -
Trre15g00455 637 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 48 631 IPR044812 GO:0019199|GO:0045087
Trre15g00455 637 ProSitePatterns Protein kinases ATP-binding region signature. 333 354 IPR017441 GO:0005524
Trre15g00455 637 FunFam Kinase family protein 302 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00455 Trre-Chr15 3245790 3250570 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00455 4 637 Receptor kinase-like Gene Family AT1G51940 67.445 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre15g00455 PK_Tyr_Ser-Thr 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00455 - - gmx:100796989 1069.68