LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g00453	ATGGTTAATGTAGGAAAAAACCCCAATTTGAAGTTACTTCAGTTTCTTCTATTTCTATTTTACCTTAATTTCAATAGAATCAGTTCTTATCAGATGTCAGCTATGAACTGTACGGACACAAGACGTGTTTGTACTTCTTTCTTGGCCTATAAGCCTAAAAAAAACCAATCTTTGGGTGTGATTCAGAGTATGTTTGATGTATTACCAAGTGACATCACAGTTGAAGGAAATGGTTGGGATTATTTATTCATAAGGAAGAATTGTTCTTGTGCATCTGGTATCAAGAAATATGTGTCTAACACTACTTACACTGTGAAATCAAATGATGGATTTGTTGATGATTTGGTTATGGATGCATATGATGGGCTTATTTTGTTACCAAACACTTCAAGGAAAGCAAGGAATGGTGCTGTTATATCATTGAGGTTGTTTTGTGGCTGTTCTAATGGACCGTGGAACTATCTGTTGAGTTATGTGTTGAGAGATGGGGACAGTGTTGAATCTTTGTCTAGTAGATTTGGGGTTAGTATGGATAGTATTGAGGATGTGAATGGTCTTGATGGTCCTGATAATGTTACTGTAGGTTCACTTTATTACATCCCTCTTGATTCTGTTCCTGGTGACCCTTATCCTCTGAATAATGCTTCTCCACCCGCTTCTGTTCCTACTCCTTCTGTTGATAGTTTACCAGGTGATGATGCCAATCATAAGTATCATGTACCCTTTGCATTGATCATTGGTGGTTTAGGAGTCGGTCTTGTTCTGATAATATTAAGCATAGTTCTTTGTGTTTGCCTGAGATCGTCAAATTGTTATTCTGATTCCAGAAGTCATGAGAAAGATGGCGAGGGAAAGGTCTCTCATAAGTTCCATATTCTTCGGAATCCAAGTTTTTTGTGTGGTTCTGGAAGGTACATATGCGGCAAACATGTTGACCACAAGCAAAGAGACGGTGACTCCAGCACTCAAGCAATTACCGTTCCAAAAGCTTCAACTCTAGGGCCGGACGTATTTGATATGGATAAACCTGTAGTTTTTGCATATGAAGAGATTTTTTCGTCAACCGAAGGCTTCTCTGATTCAAATCTACTTGGACATGGAACATATGGATCTGTCTACTATAGCCTCCTTCGCGACCAGGAAGTTGCTATTAAAAGAATGACGGCTACAAAAACAAAAGAATTCACATCAGAGATTAAAGTTTTATGCAAGGTTCACCATGCTAATCTGGTAGAATTGATTGGTTATGCAGCCAGTCATGATGAGCTTTTCCTAGTTTATGAATATGCTCAAAAGGGTTCACTCAGAAGCCATTTGCATGACCCTCAAAATAAGGGTCATTCACCACTATCATGGATCATGAGGGTCCAAATTGCACTTGATGCTGCTAGGGGACTTGAATATATACACGAGCACACAAAAGCTCATTATGTTCATCGAGATATAAAGACAAGCAACATTTTACTTGATGCTTCCTTTAAAGCAAAGATTTCAGATTTTGGATTGGCGAAACTTGTCGGGATAACAAACGAGGGGGATGTTTCAACTACCAAAGTTGTTGGTACATATGGATATCTTGCTCCGGAATACTTGAGTGATGGCCTTGCAACAACCAAAAGTGATGTTTATGCATTTGGTGTTGTTCTTTTTGAGACTATAACCGGAAAGGAGGCCATTATTCGAACAGAAGGCATGATGACAAAAAATCCTGAAAGACGATCACTAGCATCAATAATGTTGGCAGTTCTTAGGAACTCACCTGATTCATTGAGCATGTCAAGCATGAAAGATTACATTGATCCAAATATGATGAATCTGTATCCCCACGATTGTATGGCTTTGTTGGCAAAGCAATGTGTGGACGATGATCCGATCTTACGACCAGATATGAAACAAATAGTGATTTCCATCTCACAGATTCTTTTGTCTTCTATTGAGTGGGAAGCAACACTAGCTGGGAATAGCCAAGTATTCAGTGGACTTGTTCAGGGAAGATAG	1998	0.3894	MVNVGKNPNLKLLQFLLFLFYLNFNRISSYQMSAMNCTDTRRVCTSFLAYKPKKNQSLGVIQSMFDVLPSDITVEGNGWDYLFIRKNCSCASGIKKYVSNTTYTVKSNDGFVDDLVMDAYDGLILLPNTSRKARNGAVISLRLFCGCSNGPWNYLLSYVLRDGDSVESLSSRFGVSMDSIEDVNGLDGPDNVTVGSLYYIPLDSVPGDPYPLNNASPPASVPTPSVDSLPGDDANHKYHVPFALIIGGLGVGLVLIILSIVLCVCLRSSNCYSDSRSHEKDGEGKVSHKFHILRNPSFLCGSGRYICGKHVDHKQRDGDSSTQAITVPKASTLGPDVFDMDKPVVFAYEEIFSSTEGFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFTSEIKVLCKVHHANLVELIGYAASHDELFLVYEYAQKGSLRSHLHDPQNKGHSPLSWIMRVQIALDAARGLEYIHEHTKAHYVHRDIKTSNILLDASFKAKISDFGLAKLVGITNEGDVSTTKVVGTYGYLAPEYLSDGLATTKSDVYAFGVVLFETITGKEAIIRTEGMMTKNPERRSLASIMLAVLRNSPDSLSMSSMKDYIDPNMMNLYPHDCMALLAKQCVDDDPILRPDMKQIVISISQILLSSIEWEATLAGNSQVFSGLVQGR	665

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g00453	665	SUPERFAMILY	Protein kinase-like (PK-like)	337	634	IPR011009	-
	Trre15g00453	665	Gene3D	LysM domain	153	206	IPR036779	-
	Trre15g00453	665	SMART	serkin_6	358	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g00453	665	ProSiteProfiles	Protein kinase domain profile.	358	642	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g00453	665	FunFam	Kinase family protein	333	429	-	-
	Trre15g00453	665	Pfam	Protein kinase domain	359	634	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g00453	665	Gene3D	Transferase(Phosphotransferase) domain 1	431	651	-	-
	Trre15g00453	665	SUPERFAMILY	LysM domain	157	201	IPR036779	-
	Trre15g00453	665	CDD	LysM	157	200	IPR018392	-
	Trre15g00453	665	ProSitePatterns	Protein kinases ATP-binding region signature.	364	385	IPR017441	GO:0005524
	Trre15g00453	665	Pfam	LysM domain	158	195	IPR018392	-
	Trre15g00453	665	FunFam	PTI1-like tyrosine-protein kinase 3	430	651	-	-
	Trre15g00453	665	ProSiteProfiles	LysM domain profile.	156	200	IPR018392	-
	Trre15g00453	665	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	24	659	IPR044812	GO:0019199\|GO:0045087
	Trre15g00453	665	Gene3D	Phosphorylase Kinase; domain 1	334	429	-	-
	Trre15g00453	665	SMART	LysM_2	157	201	IPR018392	-
	Trre15g00453	665	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	477	489	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g00453	Trre-Chr15	3245790	3250663	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g00453	35	665	Receptor kinase-like Gene Family	AT1G51940	67.134	0.0	830

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Trre15g00453		Pkinase	1.5e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g00453	-		-	gmx:100796989	1063.14