Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00448 ATGATCTCCTCAAACCCTTCAACTTTCATGTGCAACTCAGGCACCGGTGAGTTGTCTTCTTGTAGTAACCGTTTGTGTTCTTTGAGGGTGCATTGTTTTGCTCCGACCAAGAAATCAGGTGATCACAGACCCATCAGCATTGTCATGGCAACAAGTAATGATTCCACGGTGTCTGACATTGATGATAATCCCACCATTGGCGGCGGTGTTCGGGATGTTTATGGTGAGGATAGGGCCACTGAGGATCAGTTTGTTACTCCTTGGAGTGTTTCTGTTGCCAGTGGATATACTTTGTTGAGAGATCCACATTTCAATAAAGGACTAGCCTTCACTGAGATGGAGAGGGATGCACACTACTTGCGTGGTCTTCTTCCTCCAACAGTTATTTGTCAAGAAACTCAGGTGAAGAAAATGATCCAAAACATAAGACAGTACCAAGTTCCATTGCAGAAGTACATGGCAATGATGGATCTTCAGGAGAGAAATGAAAGGCTGTTTTACAAGCTTTTAATCGATCATGTTGAGGAGTTACTACCGGTTGTTTATACTCCAACTGTTGGTGAAGCTTGCCAGAAATATGGATCCATATTCATGCATCCTCAGGGTCTTTACATAAGCTTGAAAGAGAAAGGAAGGATTCTTCAAGTGCTTAGGAATTGGCCTGAGAAGAACATTCAAGTCATTGTTGTAACTGACGGAGAGCGAATCTTGGGTCTTGGGGATCTTGGCTGTCAAGGGATGGGAATACCAGTAGGAAAACTTTCTTTATACACTGCACTTGGTGGAGTCCGCCCTTCTTCCTGCTTGCCTATTACCATTGATGTGGGTACAAACAATGAGAAGTTGTTGAATGACGAATTATACATAGGGCTCAAACATAAACGAGTAACTGGGAAGGAATATGATGAACTTATTGAGGAATTCATGACAGCATGTAAGCAAAATTATGGAGAAAAACTCCTCATCCAGTTTGAAGACTTTGCAAACCATAATGCTTTTGATCTACTCGAAAAATACAGGACAACGCATCTTGTTTTTAATGATGATATTCAGGGAACTGCATCAGTGGTCCTTGCAGGACTTGTTTCGGCTCTGAATTTGGTTGGGGGAAGCTTGGACGAGCATCGGTTCTTATTCCTTGGTGCTGGAGAGGCAGGCACTGGAATCGCAGAACTCATAGCACTCGAAATATCAAAACGGACAAATTCCCAGCTGGATGAAGTGCGCAAGAATATTTGGTTGGTGGACTCAAAGGGCTTGATTGTGAGTTCTCGCAAAGAATCACTTCAACATTTTAAGAAGCCCTGGGCTCATGACCATGAACCTGTTAAGGAACTTGTAGATGCTGTAAATCAAATTAAGCCAACAGTGTTGATCGGAACATCAGGACAAGGGAGAACTTTTACACAAGAAGTCATTGAAGCGATGGCCTCTATTAACGAGAAACCAATTATTCTTGCTCTTTCCAACCCAACATCTCAGTCAGAATGTACTGCCGAAGAAGCTTATACATGGACCCAGGGTCGAGCCATTTTCGCTAGCGGTAGCCCATTTCCCCCAGTTGAATATGATGGAAAAGTGTTTGTGCCTGGCCAGTCTAATAACGCGTACATATTTCCTGGATTTGGTCTCGGTTTAATAATGTCTGGTACAATCCGAGTGCACGATGACCTGCTTCTGGCAGCTTCGGAGGCCTTGGCTTCACAGGTGACGCAGGAGGACTATGACAGGGGACTCATATATCCGCCATTCACTAGCATCAGAAAGATTTCAGCACAAATAGCTGCCAAAGTGGCTAGTAAGGCCTATGAGCTTGGTTTGGCCACTCGCCTTCCTCGACCAAAAGATTTGTTGAGTTTTGCGGAGAGCTGTATGTATACCCCAACTTACAGAAGCTACCGGTGA 1905 0.4399 MISSNPSTFMCNSGTGELSSCSNRLCSLRVHCFAPTKKSGDHRPISIVMATSNDSTVSDIDDNPTIGGGVRDVYGEDRATEDQFVTPWSVSVASGYTLLRDPHFNKGLAFTEMERDAHYLRGLLPPTVICQETQVKKMIQNIRQYQVPLQKYMAMMDLQERNERLFYKLLIDHVEELLPVVYTPTVGEACQKYGSIFMHPQGLYISLKEKGRILQVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDELYIGLKHKRVTGKEYDELIEEFMTACKQNYGEKLLIQFEDFANHNAFDLLEKYRTTHLVFNDDIQGTASVVLAGLVSALNLVGGSLDEHRFLFLGAGEAGTGIAELIALEISKRTNSQLDEVRKNIWLVDSKGLIVSSRKESLQHFKKPWAHDHEPVKELVDAVNQIKPTVLIGTSGQGRTFTQEVIEAMASINEKPIILALSNPTSQSECTAEEAYTWTQGRAIFASGSPFPPVEYDGKVFVPGQSNNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALASQVTQEDYDRGLIYPPFTSIRKISAQIAAKVASKAYELGLATRLPRPKDLLSFAESCMYTPTYRSYR 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00448 634 Gene3D - 348 634 - -
Trre15g00448 634 FunFam Malic enzyme 93 347 - -
Trre15g00448 634 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 73 349 IPR046346 -
Trre15g00448 634 CDD NAD_bind_1_malic_enz 350 628 - -
Trre15g00448 634 FunFam Malic enzyme 348 634 - -
Trre15g00448 634 Gene3D - 93 347 IPR037062 GO:0004471
Trre15g00448 634 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 350 633 IPR036291 -
Trre15g00448 634 ProSitePatterns Malic enzymes signature. 346 362 IPR015884 GO:0004471
Trre15g00448 634 SMART Malic_M_2 350 603 IPR012302 GO:0051287
Trre15g00448 634 SMART malic_2 159 340 IPR012301 GO:0004471
Trre15g00448 634 Pfam Malic enzyme, N-terminal domain 159 340 IPR012301 GO:0004471
Trre15g00448 634 PIRSF ME 64 634 IPR001891 GO:0004470|GO:0004471
Trre15g00448 634 PRINTS Malic enzyme signature 480 496 IPR001891 GO:0004470|GO:0004471
Trre15g00448 634 PRINTS Malic enzyme signature 165 189 IPR001891 GO:0004470|GO:0004471
Trre15g00448 634 PRINTS Malic enzyme signature 346 362 IPR001891 GO:0004470|GO:0004471
Trre15g00448 634 PRINTS Malic enzyme signature 261 283 IPR001891 GO:0004470|GO:0004471
Trre15g00448 634 PRINTS Malic enzyme signature 321 339 IPR001891 GO:0004470|GO:0004471
Trre15g00448 634 PRINTS Malic enzyme signature 377 393 IPR001891 GO:0004470|GO:0004471
Trre15g00448 634 PRINTS Malic enzyme signature 225 254 IPR001891 GO:0004470|GO:0004471
Trre15g00448 634 PANTHER MALIC ENZYME-RELATED 66 633 - -
Trre15g00448 634 Pfam Malic enzyme, NAD binding domain 350 603 IPR012302 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00448 Trre-Chr15 3218666 3223109 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00448 K00029 - gmx:100785718 1059.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00448 15 3218666 3223109 Trre15g00448 15 3218666 3223109 ECH
Trre15g00448 15 3218666 3223109 Trre11g04701 11 58488741 58493142 ECH
Trre7g05710 7 62287935 62292562 Trre15g00448 15 3218666 3223109 ECH
Trre5g05471 5 55333036 55337188 Trre15g00448 15 3218666 3223109 ECH
Trre15g00448 15 3218666 3223109 Trre5g05471 5 55333036 55337188 ECH
Trre15g00448 15 3218666 3223109 Trre1g05335 1 59206788 59208069 ECH
Trre15g00448 15 3218666 3223109 Trre15g01109 15 8587974 8589705 ECH
Trre15g00448 15 3218666 3223109 Trre13g02455 13 22022580 22023836 ECH
Trre11g04701 11 58488741 58493142 Trre15g00448 15 3218666 3223109 PCT