Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00433 ATGATGCCGGTATTGCGTAGTGGAGCGCGCCGTGGTCGGCCACCAAAGCAAAACCGACAACGACCACAGCCGAAAACTCCGGCGGTAGGGGATGCGATTGCTACTAGAACTAGGCGGCGACGTGCAGCTGCTTTAGCGGTTAATGATCATGTTGAAGAGGAGCCGATTGCTGTTGCGGCAGGAAAGGAGAGGAATGAGAACGTAGATGTCGCCGCAACGGCAAAGGGAGAAGAGGAGGAGAATCGGGCATTGGAGGAAGCTGGTGGAGTTGAGAAGGAAGAGATTGGGGAGAAACAGATGGTTGGAATTGATAGTGTTGGTCATAGCAATGATAAGGCTGATGATGCTGATGGTGAAGAAGAAAGCGCCTTTGTTATTCCTGAAAAGGTTCAAGTAGGTGATTCTCCTTTGTATAAAATAGAGAAAAAACTTGGCAAGGGTGGATTTGGGCAAGTATATGTTGGTCGGCGTGTTTCTGGTGGAAATTTGAGCCAGAGAATTGGACCTGGAGCTGTAGAGGTAGCAATAAAATTTGAGCACATAAGTAGTAAAGGATGTAACAATGGACCGCCAAATGAGTGGCATGTCTACAACACCCTCGGTGGAAGTCATGGTGTGCCACAGGTACATTACAAGGGCAAGCAAGATGACTATTTCATCATGATCATGGATATTCTAGGACCTAGCTTGTGGGATGTTTGGAATACTAAGTCTCACACCATGTCCACTGAAATGGTTGCTTGTATTGCCATTGAAGCAATATCCATATTGGAGAAGATGCACTCTCAAGGGTATGTACATGGAGATGTGAAACCGGAAAATTTTCTGCTTGGCGCTCCTGGGACAGCGGACGAGAAAAAATTGTTCCTGGTGGATCTCGGACTAGCTACTAAATGGCGGGATAGTACAACTGGTTTACATGTGGACTATGACCAACGGCCTGATGTTTTCAGGGGCACAGTCCGCTATGCAAGTGTGCATGCACATTTGGGGAGAACTGCAAGCAGGAGGGATGATTTGGAATCTCTTGCATATACACTGGTTTTTCTTCTTCGAGGTCATCTTCCTTGGCAAGGATATCAGGGAGAAAACAAGGGATATCAGGTTTGTCGGAAGAAGATGGGAACGTCTCCAGATACCCTATGTTGTTTTTGTCCCCAGCCTTTTAAAGAGTTTGTTGAACATGTAGTAAGCTTAAAGTATGATGAAGAACCGAATTATGCAAAATACATTTCTCTCTTTGAAGGGATTATTGGTCCAAACCCAGATATTAGGCCACTTTATACAGAAGGTGCACAAAAGCTTGTTGGTCATAAAAGAGTCCGGCTGGCCTTAGAAGATGATGATGAACAACCCAAAAAGAAGGTTCGAGTGGGTATTCCAGCGAACCAGTGGATTAGTGTTTACAATGCTCGTAGACCTATGAAACAAAGATATCACTACAATGTGTCAAGTACAAGATTATCGCAGCACATTGACAAGGGAAACGAGGATGGTTTATATATTAGCAGTGTTGCTTCATCTCAGGGCCTATGGGCCTTAATTATGGATGCTGGGACAGGTTTCACTTCCCAAGTTTATGAACTCTCCCCCCAATTTTTCCATAAGGAATGGATCATGGAGCAGTGGGAAAAAGGTTACTATATCAACGCAGTTGCAGGAGTTGCAAATGGGAGTTCATTAGTAGTAATGTCTAAAGGCACCCAATATATTCAGCAATCATACAAAGTTAGTGATTCATTTCCTTTTAAATGGATTAACAAAAAGTGGAGGGAGGGTTTTTTTGTAACCTCAATGGCCACAGCAGGGCCCAAATGGGGAGTAGTTATGTCTCGTGGGGCAGGGTTTTCAAAACAGGTAGTCGAACTAGATTTTCTGTATCCTAGTGAAGGGATTCACAAACGGTGGGAGAGTGGATACCGAATCACATCGACTGCTGCAACTTTGGACCAAGCTGCTTTTGTTCTGAGTATTCCAGGGAAGAAGCTGCAAGACGAAACTCAGGAAACACTAAGGACTACTGCTTTTCCTAGTACACATGTTAAGGAGAAATGGGCGAAAAACCTCTACATTGCTTCTATTTGCTTTGGACGTACCGTCTCTTGA 2106 0.4454 MMPVLRSGARRGRPPKQNRQRPQPKTPAVGDAIATRTRRRRAAALAVNDHVEEEPIAVAAGKERNENVDVAATAKGEEEENRALEEAGGVEKEEIGEKQMVGIDSVGHSNDKADDADGEEESAFVIPEKVQVGDSPLYKIEKKLGKGGFGQVYVGRRVSGGNLSQRIGPGAVEVAIKFEHISSKGCNNGPPNEWHVYNTLGGSHGVPQVHYKGKQDDYFIMIMDILGPSLWDVWNTKSHTMSTEMVACIAIEAISILEKMHSQGYVHGDVKPENFLLGAPGTADEKKLFLVDLGLATKWRDSTTGLHVDYDQRPDVFRGTVRYASVHAHLGRTASRRDDLESLAYTLVFLLRGHLPWQGYQGENKGYQVCRKKMGTSPDTLCCFCPQPFKEFVEHVVSLKYDEEPNYAKYISLFEGIIGPNPDIRPLYTEGAQKLVGHKRVRLALEDDDEQPKKKVRVGIPANQWISVYNARRPMKQRYHYNVSSTRLSQHIDKGNEDGLYISSVASSQGLWALIMDAGTGFTSQVYELSPQFFHKEWIMEQWEKGYYINAVAGVANGSSLVVMSKGTQYIQQSYKVSDSFPFKWINKKWREGFFVTSMATAGPKWGVVMSRGAGFSKQVVELDFLYPSEGIHKRWESGYRITSTAATLDQAAFVLSIPGKKLQDETQETLRTTAFPSTHVKEKWAKNLYIASICFGRTVS 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00433 701 ProSitePatterns Protein kinases ATP-binding region signature. 144 177 IPR017441 GO:0005524
Trre15g00433 701 FunFam casein kinase 1-like protein HD16 110 457 - -
Trre15g00433 701 Pfam Protein kinase domain 138 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00433 701 CDD STKc_CK1 138 414 - -
Trre15g00433 701 ProSiteProfiles Protein kinase domain profile. 138 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00433 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Trre15g00433 701 MobiDBLite consensus disorder prediction 1 37 - -
Trre15g00433 701 SUPERFAMILY Protein kinase-like (PK-like) 138 421 IPR011009 -
Trre15g00433 701 Gene3D Transferase(Phosphotransferase) domain 1 105 431 - -
Trre15g00433 701 SMART serkin_6 138 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00433 701 PANTHER CASEIN KINASE-RELATED 138 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00433 Trre-Chr15 3095000 3100505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00433 233 414 MAP Kinase Kinase Kinase AT5G50180 24.457 1.83e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Trre15g00433 Pkinase 1.7e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00433 - - gmx:100799630 1102.81