Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00429 ATGGTCTGCAAGGATGGTAGTAATAAGCATTTAATGGATAATGGTAAGTATGTCCGTTATACACCTGAGCAGGTTGAAGCTCTTGAAAGGCTTTATCATGACTGTCCTAAACCTAGTTCGATTCGAAGACAACAACTCATTAGGGAGTGTCCTATTCTCTCTAATATTGAGCCAAGGCAAATCAAAGTTTGGTTCCAAAATAGAAGATGTAGAGAGAAGCAGAGAAAAGAATCTTTCCGGCTGCAAGGTGTGAATAGGAAGTTGACAGCCATGAACAAGTTGCTGATGGAGGAAAATGATAGGTTGCAGAAGCAGGTGTCTCATCTGGTGTATGAAAATGGCTATTTTCGTCAAAACACCCAAAATGCAACCAAAGACACGAGTTGTGAGTCAGTTGTGACTAGTGGTCAGCATAATATGACTAGTCAACATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAAACTTTAGCAGAATTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCTTGCGGTCTAGTGGGACTAGAGCCCACTAGGGTTGCGGAAATCCTCAAAGATCGTCCTTTGTGGTTTCGTGATTGCCGAGCTGTTGATATTGTCAATGTGCTGCCCACTGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCGCCAACCACATTGGCACCTGCTCGAGACTTCTGGTTGTTACGCTACACTTCTGTTGTAGAAGATGGCAGCCTAGTGATCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCTCCTGTGCCGCATTTTGTTAGAGCAGATATGCTGCCTAGTGGGTACCTAATAAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGACTTGGAGCCATGGAGTGTGCCAGAAGTACTGCGTCCACTATATGAATCACCAACAGTGCTGGCTCAGAAGACTACTATGGCGGCCTTACGTCATCTAAGGCAGATTTCGCATGAAGTTTCTCAGCCCAACGTCACTGGGTGGGGTAGACGACCTGCAGCTCTGCGCGCACTTAGCCAGAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAAGGATGGACTATGATGGGCAATGATGGTGTAGATGATGTTACTATTCTAGTGAATTCATCACCTGACAAGTTAATGGGTCTGAATCTTTCTTTCGGCAATGGGTTCCCGTCTGTCAGTAATGCAGTGTTATGTGCCAAGGCCTCAATGCTATTACAGAATGTGCCTCCAGCCATTCTCCTAAGGTTCCTGCGAGAACATAGATCAGAATGGGCAGACAATAACATGGATGCGTACACAGCTGCTGCTATTAAAGTTGGCCCTTGTAGCCTTACAGGTTCTCGCATAGGAAATTATGGGGGTCAAGTTATACTCCCACTAGCACACACTATTGAGCATGAGGAGTTTTTGGAAGTCATCAAATTGGACGGAGTTGCCCATTCGCCTGAAGACACAATGATGGCCAGAGAATTGTTTCTGTTGCAACTCTGCAGCGGAATGGATGAGAATGCTATTGGCACCTGTGCAGAACTTATATTTGCTCCAATTGATGCTTCATTTGCTGATGATGCTCCACTTCTACCTTCTGGATTTCGTATCATTCCTCTTGAATCTGGAAAAGAAGCTTCCAGTCCTAATCGCACTCTTGACCTTGCATCTGCCCTTGACGTTGGTGGCCCTACTGGAAACCGAGCTTCAAGTGATAATGCTGGAAATTCTGGCTGTGTGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGTCATATGCAAGAGAATGTAGCCTGCATGGCACGTCAATATGTTCGCAGTATTATATCATCAGTCCAAAGGGTAGCATTAGCACTTTCTCCTTCTCATCTGAGTTCACATGCTGGGCTGAGGTCACCATTAGGTACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTACAGGTGCTACTTAGGTGTGGATCTACTTAAATCTGATAATGAAGGAAAAGAACCTATACTCAAGTCCTTGTGGCATCACTCAGATGCTGTATTATGCTGCACACTGAAGGCATTGCCGGTGTTCACTTTCTCAAACCAGGCAGGGCTTGACATGCTGGAAACTACCCTAGTTGCATTACAAGATATAACTTTGGAGAAAATATTTGATGATCATGGTCGAAAAACGCTATTTTCCGAGTTTCCCCAGATTATTCAACAGGGTTTTGCATGTCTGCAAGGTGGTATCTGTCTCTCAAGCATGGGGCGACCTGTTTCGTACGAGAGAGCTGTTGCTTGGAAGGTGCTGAATGAAGAACAGAATGCTCATTGTATTTGCTTTATGTTTGTGAACTGGTCTTTTGTTTGA 2508 0.449 MVCKDGSNKHLMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPRQIKVWFQNRRCREKQRKESFRLQGVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYFRQNTQNATKDTSCESVVTSGQHNMTSQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDIVNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVVEDGSLVICERSLKNTQNGPSMPPVPHFVRADMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESPTVLAQKTTMAALRHLRQISHEVSQPNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTMMGNDGVDDVTILVNSSPDKLMGLNLSFGNGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSLTGSRIGNYGGQVILPLAHTIEHEEFLEVIKLDGVAHSPEDTMMARELFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDVGGPTGNRASSDNAGNSGCVRSVMTIAFEFAFESHMQENVACMARQYVRSIISSVQRVALALSPSHLSSHAGLRSPLGTPEAQTLAHWICNSYRCYLGVDLLKSDNEGKEPILKSLWHHSDAVLCCTLKALPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKTLFSEFPQIIQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEQNAHCICFMFVNWSFV 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00429 835 Coils Coil 85 105 - -
Trre15g00429 835 Gene3D - 191 369 IPR023393 -
Trre15g00429 835 SMART START_1 156 366 IPR002913 GO:0008289
Trre15g00429 835 CDD bZIP 68 107 - -
Trre15g00429 835 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 835 IPR044830 GO:0003700
Trre15g00429 835 SMART HOX_1 13 79 IPR001356 GO:0003677
Trre15g00429 835 SUPERFAMILY Bet v1-like 156 366 - -
Trre15g00429 835 ProSiteProfiles START domain profile. 147 347 IPR002913 GO:0008289
Trre15g00429 835 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Trre15g00429 835 FunFam Homeobox-leucine zipper protein REVOLUTA 16 71 - -
Trre15g00429 835 SUPERFAMILY Homeodomain-like 16 77 IPR009057 -
Trre15g00429 835 Gene3D - 8 80 - -
Trre15g00429 835 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Trre15g00429 835 Pfam MEKHLA domain 692 834 IPR013978 -
Trre15g00429 835 Pfam START domain 157 365 IPR002913 GO:0008289
Trre15g00429 835 FunFam homeobox-leucine zipper protein ATHB-15 192 373 - -
Trre15g00429 835 CDD START_ArGLABRA2_like 151 366 - -
Trre15g00429 835 CDD homeodomain 16 76 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00429 Trre-Chr15 3043780 3050908 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00429 7 835 Homeobox Transcription Factor Family AT4G32880 78.401 0.0 1368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre15g00429 START 6.1e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00429 K09338 - gmx:100800165 1568.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00429 15 3043780 3050908 Trre15g00429 15 3043780 3050908 ECH
Trre11g04710 11 58591256 58598051 Trre15g00429 15 3043780 3050908 PCT