Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00427 ATGGAAGCACCGGATTACTTTGTCGGTGGCTACTACGGTGCCGGAGTACACGGAGGAATTGACCAATTCTCACCGGAAAAGCGTCACGGTCATGGTGGTGGTGGTGTTGACCAGAAGCCTTGTGAGACTTTTGCCATTGATGACTTACTTGATTTCTCCAATGCTGATGCTATTATGTCTGACGGTTTCTTCGACAATGTCGCTGGTAATTCCACCGACTCTTCCAATGTTACTGCCGTTGATAGCTGTAACTCGTCAGGCTCCGGTGGAGATAATCGCTTTGGAGGCACAATTGTTCCGTATGGCTTCTCTGGTGATGTTCAACTCAACGGTGAACTCTGTGTTCCGTATGATGAAATGGCGGAATTGGAATGGCTCTCGAATTTCGTGGAAGATTCATACTCAGCCGAAGAGGAATTGAAAACACTGCAACTTCTCTCCGGTGCCGGCGCCGTCAAACCACAAACGCCGGAGTCTTCCTCTTCCACCGACACTCTCCCAGCGTTTTCATCTGACGAGAGTGCTCGGAATGTTAACGCGTCGTTTCTCCGACCGGAAACACCTCTCCCTGGAAAAGCAAGGAGCAAACGCTCACGCGCTGCACCAGGCGATTGGTCCACACGCCTACTTCATATCCCTGACGCGCCACCACAACAGATGAAAATTGTTCAAATTAAGAAACGTGAGGATCCAAATGTAGAATGTTCTGGAAGGAAATGTCTCCACTGCGGCACTGATAAAACGCCGCAGTGGAGAACCGGTCCAATGGGACCGAAAACACTTTGCAATGCTTGTGGTGTTAGGTTTAAATCCGGTAGGTTGGTGCCGGAGTATCGACCGGCGGCGAGTCCAACTTTTGTATCGGCGAAGCATTCAAATTCGCATAGGAAAGTTTTGGAATTAAGGAGGCAGAAAGAGATGCAAAGATCACAGCATCAACAACTTCTGAGTCACAGTTCAATTTTCGGCGTATCATCTAACGGTGGAGATGACTTCATCAATTATCATCATCATCATTGTGGGCCAGAATTTAGGCATGTTATCTAG 1047 0.4833 MEAPDYFVGGYYGAGVHGGIDQFSPEKRHGHGGGGVDQKPCETFAIDDLLDFSNADAIMSDGFFDNVAGNSTDSSNVTAVDSCNSSGSGGDNRFGGTIVPYGFSGDVQLNGELCVPYDEMAELEWLSNFVEDSYSAEEELKTLQLLSGAGAVKPQTPESSSSTDTLPAFSSDESARNVNASFLRPETPLPGKARSKRSRAAPGDWSTRLLHIPDAPPQQMKIVQIKKREDPNVECSGRKCLHCGTDKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSAKHSNSHRKVLELRRQKEMQRSQHQQLLSHSSIFGVSSNGGDDFINYHHHHCGPEFRHVI 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00427 348 MobiDBLite consensus disorder prediction 151 211 - -
Trre15g00427 348 MobiDBLite consensus disorder prediction 153 181 - -
Trre15g00427 348 CDD ZnF_GATA 239 286 IPR000679 GO:0006355|GO:0043565
Trre15g00427 348 ProSitePatterns GATA-type zinc finger domain. 240 265 IPR000679 GO:0006355|GO:0043565
Trre15g00427 348 ProSiteProfiles GATA-type zinc finger domain profile. 234 270 IPR000679 GO:0006355|GO:0043565
Trre15g00427 348 FunFam GATA transcription factor 228 315 - -
Trre15g00427 348 Pfam GATA zinc finger 240 273 IPR000679 GO:0006355|GO:0043565
Trre15g00427 348 PANTHER GATA TRANSCRIPTION FACTOR 38 314 - -
Trre15g00427 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 297 - -
Trre15g00427 348 SMART GATA_3 234 284 IPR000679 GO:0006355|GO:0043565
Trre15g00427 348 Gene3D - 235 316 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00427 Trre-Chr15 3016258 3017470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00427 42 348 C2C2-Gata Transcription Factor Family AT4G32890 48.113 8.27e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre15g00427 GATA 7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00427 - - cam:101510199 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00427 15 3016258 3017470 Trre15g00427 15 3016258 3017470 ECH