Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre15g00427 | ATGGAAGCACCGGATTACTTTGTCGGTGGCTACTACGGTGCCGGAGTACACGGAGGAATTGACCAATTCTCACCGGAAAAGCGTCACGGTCATGGTGGTGGTGGTGTTGACCAGAAGCCTTGTGAGACTTTTGCCATTGATGACTTACTTGATTTCTCCAATGCTGATGCTATTATGTCTGACGGTTTCTTCGACAATGTCGCTGGTAATTCCACCGACTCTTCCAATGTTACTGCCGTTGATAGCTGTAACTCGTCAGGCTCCGGTGGAGATAATCGCTTTGGAGGCACAATTGTTCCGTATGGCTTCTCTGGTGATGTTCAACTCAACGGTGAACTCTGTGTTCCGTATGATGAAATGGCGGAATTGGAATGGCTCTCGAATTTCGTGGAAGATTCATACTCAGCCGAAGAGGAATTGAAAACACTGCAACTTCTCTCCGGTGCCGGCGCCGTCAAACCACAAACGCCGGAGTCTTCCTCTTCCACCGACACTCTCCCAGCGTTTTCATCTGACGAGAGTGCTCGGAATGTTAACGCGTCGTTTCTCCGACCGGAAACACCTCTCCCTGGAAAAGCAAGGAGCAAACGCTCACGCGCTGCACCAGGCGATTGGTCCACACGCCTACTTCATATCCCTGACGCGCCACCACAACAGATGAAAATTGTTCAAATTAAGAAACGTGAGGATCCAAATGTAGAATGTTCTGGAAGGAAATGTCTCCACTGCGGCACTGATAAAACGCCGCAGTGGAGAACCGGTCCAATGGGACCGAAAACACTTTGCAATGCTTGTGGTGTTAGGTTTAAATCCGGTAGGTTGGTGCCGGAGTATCGACCGGCGGCGAGTCCAACTTTTGTATCGGCGAAGCATTCAAATTCGCATAGGAAAGTTTTGGAATTAAGGAGGCAGAAAGAGATGCAAAGATCACAGCATCAACAACTTCTGAGTCACAGTTCAATTTTCGGCGTATCATCTAACGGTGGAGATGACTTCATCAATTATCATCATCATCATTGTGGGCCAGAATTTAGGCATGTTATCTAG | 1047 | 0.4833 | MEAPDYFVGGYYGAGVHGGIDQFSPEKRHGHGGGGVDQKPCETFAIDDLLDFSNADAIMSDGFFDNVAGNSTDSSNVTAVDSCNSSGSGGDNRFGGTIVPYGFSGDVQLNGELCVPYDEMAELEWLSNFVEDSYSAEEELKTLQLLSGAGAVKPQTPESSSSTDTLPAFSSDESARNVNASFLRPETPLPGKARSKRSRAAPGDWSTRLLHIPDAPPQQMKIVQIKKREDPNVECSGRKCLHCGTDKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSAKHSNSHRKVLELRRQKEMQRSQHQQLLSHSSIFGVSSNGGDDFINYHHHHCGPEFRHVI | 348 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre15g00427 | 348 | MobiDBLite | consensus disorder prediction | 151 | 211 | - | - | |
Trre15g00427 | 348 | MobiDBLite | consensus disorder prediction | 153 | 181 | - | - | |
Trre15g00427 | 348 | CDD | ZnF_GATA | 239 | 286 | IPR000679 | GO:0006355|GO:0043565 | |
Trre15g00427 | 348 | ProSitePatterns | GATA-type zinc finger domain. | 240 | 265 | IPR000679 | GO:0006355|GO:0043565 | |
Trre15g00427 | 348 | ProSiteProfiles | GATA-type zinc finger domain profile. | 234 | 270 | IPR000679 | GO:0006355|GO:0043565 | |
Trre15g00427 | 348 | FunFam | GATA transcription factor | 228 | 315 | - | - | |
Trre15g00427 | 348 | Pfam | GATA zinc finger | 240 | 273 | IPR000679 | GO:0006355|GO:0043565 | |
Trre15g00427 | 348 | PANTHER | GATA TRANSCRIPTION FACTOR | 38 | 314 | - | - | |
Trre15g00427 | 348 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 237 | 297 | - | - | |
Trre15g00427 | 348 | SMART | GATA_3 | 234 | 284 | IPR000679 | GO:0006355|GO:0043565 | |
Trre15g00427 | 348 | Gene3D | - | 235 | 316 | IPR013088 | GO:0006355|GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre15g00427 | Trre-Chr15 | 3016258 | 3017470 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre15g00427 | 42 | 348 | C2C2-Gata Transcription Factor Family | AT4G32890 | 48.113 | 8.27e-85 | 257 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-GATA | Trre15g00427 | GATA | 7e-16 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre15g00427 | - | - | cam:101510199 | 608.601 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre15g00427 | 15 | 3016258 | 3017470 | Trre15g00427 | 15 | 3016258 | 3017470 | ECH |