Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00424 ATGACACAAACAACAACAACAACAACCTCGTCAGAAACAACCTCAACCTCTTCAACATCTTCACCACCCTCACATTCAACCCAAAAACAAAGCCCAACAAAGGCCCAAAAGCCCAAAGACACAAAACACCCAACCTACCATGGTGTTAGAAAACGCAATTGGGGTAAATGGGTTTCAGAAATTCGTGAACCAAGAAAAAAATCAAGAATTTGGTTAGGAACATTCTCAACACCAGAAATGGCAGCAAGAGCACATGATGTAGCAGCTTTAACAATCAAAGGAAAAACCGCAATTCTTAATTTTCCTCATTTATCAAACATGCTTCCTAGACCTGCCACGTCATCACCACGTGACATTCAAGCTGCAGCTACAGCAGCAGCTGCTATGGTTGACTTTGATGATGACCACAACACTGTCTTGCACGTGACAGAACAACAATGTTGTTGTGATGATGAATCTGAGGAACAAGAACTTAGTCAGATTGTTGAACTTCCTAAAATTAATGAAGAAGGTGAAGATGACTCGGTTGTTGACTCAGTTAATACCGAGTTTGTTTTGCTTGATGACTCGGTAATTGATAGTAGTAATTGGGTTTATCATCTTTCTCATGAGTCAATTGGGTTTGAAGGAATTGAATTCTATTCAACTTTTTCTGATGATTTTTCTATACCCATTTGGGATTAA 684 0.3918 MTQTTTTTTSSETTSTSSTSSPPSHSTQKQSPTKAQKPKDTKHPTYHGVRKRNWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGKTAILNFPHLSNMLPRPATSSPRDIQAAATAAAAMVDFDDDHNTVLHVTEQQCCCDDESEEQELSQIVELPKINEEGEDDSVVDSVNTEFVLLDDSVIDSSNWVYHLSHESIGFEGIEFYSTFSDDFSIPIWD 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00424 227 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
Trre15g00424 227 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Trre15g00424 227 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Trre15g00424 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 22 171 - -
Trre15g00424 227 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Trre15g00424 227 FunFam Ethylene-responsive transcription factor 2 45 103 - -
Trre15g00424 227 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Trre15g00424 227 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Trre15g00424 227 MobiDBLite consensus disorder prediction 1 34 - -
Trre15g00424 227 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Trre15g00424 227 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Trre15g00424 227 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00424 Trre-Chr15 2990505 2991188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00424 26 188 AP2-EREBP Transcription Factor Family AT5G11590 51.149 3.76e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre15g00424 AP2 3.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00424 K09286 - gmx:100804056 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00424 15 2990505 2991188 Trre15g00424 15 2990505 2991188 ECH