LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g00419	ATGAATTTATCAGCTATGCCAAAAGCATTCTTAAACCAACATAGTTGGTATGAATCTGCTCTTTCTCAAGTTACTCCTATCAACAATAATTTCAAGTCTACCTCTTCTAAAATCATTTATACATACAACAATGTTATGAATGGTTTTAGTGCAAATCTATCACCCGAAGAGCATGAAGCTCTCAAAACCTCCCCCGGTTACATTTCATCAATACCAGATTTACCCTTGAAGCTTCACACAACACACTCACCTCAATTCCTTGGTCTTAATCCCTACAAAGGAGCATGGTCAGCCTCTAATTTTGGCAAAGATGTCATTGTTGGTGTGATTGACTCTGGTATTTGGCCAGAAAGTGAAAGTTTCAATGATAGAGGAATGACTGAAATTCCATCAAAATGGAAAGGCCAATTATGTCAATTTGAAAATACCAACAATTCATCTTTGTGCAACAAGAAACTCATTGGAGCTAGGTACTTTAATAAAGGATTTTTGGCGAAATATTCAAACCTTAGCCTTAGTAGAACAACTGTTAACACAACACGTGACAAATTCGGTCATGGGACCCACGTTTCATCAATAGCAGCAAGAAGCAAAGTAGATGGTGCATCTTTCTTTGGTTTAGCAAATGGAACAGCAATGGGGATAGCTTCATTGTCTCGACTAGCCTTCTACAGGGTTGCGTGGGGAACGCATGCAGTTACACTTGTATCGGATGTAATAGCTGCAATTGATGCTACAATATCAAGTGGTGTTGATGTTCTTTCAATGTCATTTAGCTCTGACAATGTGCCTTTGTATGAAGATGGTATTGCTATAGGATCATTTGCAGCTATGGAAAAAGGTATTTTTGTGTCTGCTTCAGCAGGTAATGATGGACCTTCCGTTAGAACTTTAAGCAATGAAATGCCGTGGGTGACAACTGTTGCTGCTGGTACTTTAGATCGCAAATTTCATGGAAATATTACACTTGGTAATGGAATCTCACTCACTGGCATCGCTTGTTATCATGGTAAATTCCCCGCTACCAATTTTCCAATTGTTTTCATGGGTATGTGTGACAATGTTACAGAACTAATCAAAGTGAAGAGCAAGATTGTGGTTTGTGAAGTTAAGAATGGAACCGTTGATAATCTTCTTAATACATCTAAGAATTTGTATGAAGCAAAAGTTGTTGGAAGTGTTCTCATAACATACACATTACAACAAGTTGATGAATTTATGTTATTAAGTTTTGTCCCATTCCCAACTATCATTATTAACCAAAAAAATGGAGAAGTTGTCAAAGATTTTGTCAAGAGAACCTCTTACTCAAGTTCAATTGCAAAAATGTCTTTTAAGATAACATCTCTTGACGCTAAACCAGCGCCTAGTGTGGATTATTATAGTTCAAAAGGGCCTTCCAAGAGTTGTCCAAATGTTTTGAAACTCGATATTACAGGTCCTGGTACATCAATCTTAGCAGCATGGCCCACAAATCTTCCCGTGGCTGATGTTGTATCTTATAATAAGTTTAATATTTTAAGTGGAACATCTATGGCGTGCCCTCATATTGCTGGTGTCGCAGCGCTTTTAAAAGGCGCACATGATTATGTTAATCTTCTTTGTGCACTTAACTACACACAAAAACACATCACTGCCATTACAAGATCATCTGTTAATGATTGCTCTAAACCTTCATTAGATCTCAATTATCCTTCTTTCATTGCTTTTTTCAATGCTGGAAATTCTTCAAAGACAACACAACATTTTCATAGAACAGTTACCAATGTTGGTGAAGGACAAACAACTTATGTTGCTAATGTTACACCAATTAAAAGTTTTCGTATCAGCGTTATTCCAAATAAGTTGGTGTTCAAGAAGAAGAATGAGAAGATAAGCTACAGGTTGAGCATTGAAGGTCCAAGAATTATACAAAAGAATAAATTATCTTTCGGATATCTTACTTGGAAGGATGAGAAGCATGTAGTCAGAAGTCTTATTGTTGTAACCACCCCCAATTTCAATTTGTAG	2010	0.3682	MNLSAMPKAFLNQHSWYESALSQVTPINNNFKSTSSKIIYTYNNVMNGFSANLSPEEHEALKTSPGYISSIPDLPLKLHTTHSPQFLGLNPYKGAWSASNFGKDVIVGVIDSGIWPESESFNDRGMTEIPSKWKGQLCQFENTNNSSLCNKKLIGARYFNKGFLAKYSNLSLSRTTVNTTRDKFGHGTHVSSIAARSKVDGASFFGLANGTAMGIASLSRLAFYRVAWGTHAVTLVSDVIAAIDATISSGVDVLSMSFSSDNVPLYEDGIAIGSFAAMEKGIFVSASAGNDGPSVRTLSNEMPWVTTVAAGTLDRKFHGNITLGNGISLTGIACYHGKFPATNFPIVFMGMCDNVTELIKVKSKIVVCEVKNGTVDNLLNTSKNLYEAKVVGSVLITYTLQQVDEFMLLSFVPFPTIIINQKNGEVVKDFVKRTSYSSSIAKMSFKITSLDAKPAPSVDYYSSKGPSKSCPNVLKLDITGPGTSILAAWPTNLPVADVVSYNKFNILSGTSMACPHIAGVAALLKGAHDYVNLLCALNYTQKHITAITRSSVNDCSKPSLDLNYPSFIAFFNAGNSSKTTQHFHRTVTNVGEGQTTYVANVTPIKSFRISVIPNKLVFKKKNEKISYRLSIEGPRIIQKNKLSFGYLTWKDEKHVVRSLIVVTTPNFNL	669

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g00419	669	CDD	PA_subtilisin_like	320	435	-	-
	Trre15g00419	669	Gene3D	Peptidase S8/S53 domain	104	529	IPR036852	GO:0004252\|GO:0006508
	Trre15g00419	669	Pfam	Subtilase family	102	550	IPR000209	GO:0006508\|GO:0008236
	Trre15g00419	669	Pfam	Fibronectin type-III domain	561	662	IPR041469	-
	Trre15g00419	669	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	2	79	IPR037045	-
	Trre15g00419	669	CDD	Peptidases_S8_3	76	528	IPR034197	-
	Trre15g00419	669	Gene3D	-	314	451	-	-
	Trre15g00419	669	ProSiteProfiles	Serine proteases, subtilase domain profile.	75	577	-	-
	Trre15g00419	669	Pfam	Peptidase inhibitor I9	10	79	IPR010259	-
	Trre15g00419	669	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	527	662	IPR045051	-
	Trre15g00419	669	PRINTS	Subtilisin serine protease family (S8) signature	102	121	IPR015500	-
	Trre15g00419	669	PRINTS	Subtilisin serine protease family (S8) signature	508	524	IPR015500	-
	Trre15g00419	669	PRINTS	Subtilisin serine protease family (S8) signature	182	195	IPR015500	-
	Trre15g00419	669	Gene3D	-	534	665	-	-
	Trre15g00419	669	SUPERFAMILY	Subtilisin-like	78	549	IPR036852	GO:0004252\|GO:0006508
	Trre15g00419	669	ProSitePatterns	Serine proteases, subtilase family, serine active site.	509	519	IPR023828	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g00419	Trre-Chr15	2941283	2943413	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g00419	1	652	Subtilisin-like Serine Gene Family	AT5G67090	40.111	3.31e-165	490

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g00419	-		-	pvu:PHAVU_010G119000g	604.749