Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00417 ATGGCTGGCATAGCATTTGGAAGGTTTGATGATTCTTTCAGCTTTGGGTCAATTAAGGCCTATATTGCTGAGTTCATCTCAACTTTGATCTTTGTTTTTGCTGGTGTTGGTTCAGCCATAGCCTATGGTAAGTTGACATCAGATGCAGCACTTGATCCAGCTGGTTTACTAGCAGTTGCTGTTTGCCATGGTTTTGCACTTTTTGTTGCTGTTTCAGTTGGTGCAAACATTTCTGGTGGTCATGTCAACCCTGCTGTCACCTTTGGATTGGCCGTTGGTGGACAAATCACCATCATCACTGGTATCTTTTACTGGATTGCCCAACTTCTTGGCTCCATAGTTGCATGTTTTCTTCTCCAGTTTGTCACTGGAGGCTTGGAAACTCCAATCCACAGTGTGGCAGCTGAAGTAGGACCAATTGGAGGAGTTGTTACTGAAATAATCATAACATTTGGTTTGGTGTACACAGTTTATGCTACAGCAGCTGACCCAAAGAAAGGGGAAATAGGCACAGTTGCACCCATTGCTATTGGTTTCATTGTTGGTGCAAACATATTGGCAGCAGGCCCATTCTCTGGTGGATCGATGAACCCAGCAAGATCTTTTGGGCCTGCAGTTGTTAGTGGTAATTTCCATGACAATTGGATCTATTGGGCTGGGCCTCTTATTGGTGCTGGTTTGGCTGGGCTTATCTATGGCAATTTGTTCATCCACTCTGAACATGCACCTCTCTCTAGTGATTTTTGA 747 0.4431 MAGIAFGRFDDSFSFGSIKAYIAEFISTLIFVFAGVGSAIAYGKLTSDAALDPAGLLAVAVCHGFALFVAVSVGANISGGHVNPAVTFGLAVGGQITIITGIFYWIAQLLGSIVACFLLQFVTGGLETPIHSVAAEVGPIGGVVTEIIITFGLVYTVYATAADPKKGEIGTVAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFHDNWIYWAGPLIGAGLAGLIYGNLFIHSEHAPLSSDF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00417 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Trre15g00417 248 Gene3D Glycerol uptake facilitator protein. 2 247 IPR023271 -
Trre15g00417 248 Pfam Major intrinsic protein 16 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre15g00417 248 CDD MIP 19 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre15g00417 248 PANTHER AQUAPORIN-8 4 241 IPR034294 -
Trre15g00417 248 SUPERFAMILY Aquaporin-like 13 242 IPR023271 -
Trre15g00417 248 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre15g00417 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre15g00417 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre15g00417 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre15g00417 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre15g00417 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre15g00417 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre15g00417 248 FunFam Probable aquaporin TIP1-1 2 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00417 Trre-Chr15 2917235 2919066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00417 1 248 Major Intrinsic Protein MIP AT3G16240 79.600 5.89e-140 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00417 K09873 - gmx:100803901 424.861