Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre15g00413 | ATGGAAAATCGTCAACGAATAACACTTTATGACCAAATGATCTCCGGTAACACAAGCAACAACAACACACGAATCTCACTTGCTAGTTTAATCCAAAACGAAGCCGTTTTAACCAACCAGAAAACCCCAAACCCAACACTTTTAGACATTATACGAGAAAACGAACCCAACAACGTTGTTAATGTTAACAACAATCGAAAATCGTGGAAAGGTTTTAAGGAATTACTTCGTTTAAAGCGTCGTAACTCGGACGAGTCAACTCAACAACAACCACAACAAAACGACATCGTTCATGAAGATGTTGTGAATTCGGATCTGACAGAGTTACTTGCCGGTGGGGAATCCTACGACGAGGAAATTAATGTTAATAATTCGGAGACAGCGCAGGTTAGTATGTCGTTGATGGATTTGTTGGAAGAAAGTGAAATTGAATTGGATCGAAGTAGTTATGTTGATGATGAAGGTGATGATGATGACGTGGATGAGAATCATGAAGAAGAAAAAGAAGAGGAAAGAGAAGAAGAAGGAGGAGAAGGGAATGTTAAGGTGGAACACAATTGTTGCGTGTGTATGGTAAGGCATAAAGGTGCAGCGTTTATACCGTGTGGACACACGTTTTGCAGAATGTGTTCAAGAGAGCTTTGGGTTAGTAGAGGGAATTGTCCTCTTTGCAATCATTTTATATTAGAAGTTCTTGATATTTTCTAA | 708 | 0.3912 | MENRQRITLYDQMISGNTSNNNTRISLASLIQNEAVLTNQKTPNPTLLDIIRENEPNNVVNVNNNRKSWKGFKELLRLKRRNSDESTQQQPQQNDIVHEDVVNSDLTELLAGGESYDEEINVNNSETAQVSMSLMDLLEESEIELDRSSYVDDEGDDDDVDENHEEEKEEEREEEGGEGNVKVEHNCCVCMVRHKGAAFIPCGHTFCRMCSRELWVSRGNCPLCNHFILEVLDIF | 235 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre15g00413 | 235 | SMART | ring_2 | 187 | 224 | IPR001841 | - | |
| Trre15g00413 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 187 | 225 | IPR001841 | - | |
| Trre15g00413 | 235 | MobiDBLite | consensus disorder prediction | 85 | 100 | - | - | |
| Trre15g00413 | 235 | MobiDBLite | consensus disorder prediction | 145 | 178 | - | - | |
| Trre15g00413 | 235 | MobiDBLite | consensus disorder prediction | 81 | 101 | - | - | |
| Trre15g00413 | 235 | SUPERFAMILY | RING/U-box | 186 | 231 | - | - | |
| Trre15g00413 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 155 | 235 | IPR013083 | - | |
| Trre15g00413 | 235 | MobiDBLite | consensus disorder prediction | 146 | 174 | - | - | |
| Trre15g00413 | 235 | PANTHER | OS01G0917900 PROTEIN | 4 | 93 | - | - | |
| Trre15g00413 | 235 | CDD | RING-HC | 187 | 224 | - | - | |
| Trre15g00413 | 235 | Pfam | Zinc finger, C3HC4 type (RING finger) | 184 | 229 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre15g00413 | Trre-Chr15 | 2890144 | 2890851 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre15g00413 | 3 | 235 | C3H Transcription Factor Family | AT3G25030 | 35.185 | 1.38e-35 | 125 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre15g00413 | - | - | cam:101511225 | 291.967 |