Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00411 ATGGCTTTCCTAAATCATAACATAAATCACTTGTTCATTACTTTCCTCGTACTATTTTGTACTACCTTTTATTCATGTTATAGTTCAGTCAACGACACAATTACATCATCCAAATCACTCAAAGACCAAGTCACAATAACCTCAAACAACACAAACTTCAAGCTAGGATTTTTCAGCCCAATAAATTCAACCAAACGTTACTTGGGAATTTGGTACATCAATGAAACCAACAACATATGGATTGCAAACAGAGATCAACCTCTTAAAGATTCATCAGGAATAGTCACAATTGACAAACATGGAAATCTTGTAATATTGAACAATCAAAATGGTACCATCATTTGGACAACAAATATTTCAAATGTTACAACAAATTCAACAGCTCAACTTGATGATTTAGGAAACTTGATTCTAACGGACATCGATTCTGGAGTAAAAATTTGGGATAGTTTCTCACACCCTGCAGATGCAGCTGTTCCAACCATGAGAATTGCTGCTAACAAAGTAACAAATAAGAAAATAGCTTTTGTATCATGGAAAAGTGAAAATGATCCTTCTTCAGGACATTTTTCAGCTAGTCTTGAAAGATTGGATGCACCGGAAATTTTTATTTGGCATGATAAAAATATTCATTGGAGAACTGGTCCATGGAATGGAAGAGTTTTTCTCGGATCTCCAAGAATGTTAACGGAGTATTTATTCGGTTGGAGTTTAATTCCCGATGATGGTGATGGAACTACTTATTTAACTTACGATTTCCGTGACAAAACTATGTTTGGAATTCTCTCATTGACATATCATGGAACACTTAAGTTGGTTGAGTACCAAAATAAAAAGGAAATTTTGAGACTTGGGGTTGATCAAAATGAGTGTGATTTTTATGGAAAATGTGGACCATTTGGGAATTGTGATAATTCTAGTATACCAATTTGTAGTTGTTTTGATGGGTTTGAGCCAAAGAATTTGGTGGAATGGAATTTAAGAAATTGGACTAATGGTTGTGTTAGGAAAGAAGGATTTAACTTGAAGTGTGAGATGCTGAAGATCAATGGATCAAGTGAATTTAAACAAGATGGTTTTTCTGTAAAACATAATATGAAAGTTCCTGATTTTATAGAGAGATCAGTTAGTAATCAAAACAATTGTGCAGCAGATTGTTTGGCAAATTGTTCTTGTATGGCACATGCATATGACCCTTCTATAGGTTGTATGTATTGGAGTGGAAATTTAATTGATTTGCAGAAGTTTCCTTACGGAGGAGTTGATCTCTTCATTCGTGTACCGGCAGAACTAGCAGTAGCAGATAATAAAAAGGAAAAAGGTGTAAACAAGAGTTTTATAATCATTCCTATTGTTGGAGGGATAGGAGCACTTACCTTGGTTATATGTGCTTATCTTTTGTGGAGGAAATGTTCTGCTAGACATAAAGAAAGACACCCTCAACACTCGATTATGAGAGGACAAAAACAAATGAAATTAGATGAACTACCACTATATGATTTTAAAAAGCTCGAAACTGCCACAAACAATTTTCACATTGATAACATGCTTGGGAAGGGAGGTTTTGGCCCAGTATACAAGGGAATAATGGAAGATGGCAATGAAATTGCGGTAAAAAGACTTTCAAAAGCATCTGGACAAGGAATAGAAGAATTCATGAATGAAGTACTAGTGATTTCAAAACTTCAACATCGAAATCTTGTAAGAATTCTTGGTTGCTGTGTTGAAAGAGGCGAGCAAATTTTGGTTTATGAGTTCATGCCAAATAAGAGTTTGGATGCCTTTCTCTTTGATCCACTACAAAAGAAAATATTAGATTGGAGAAAGAGGTCAAATATAATCGAAGGAATAGCTCGAGGAATACTCTATCTTCACAGAGACTCGAGACTAAGGATCATACATAGAGATTTGAAAGCAAGCAATATCTTACTTGATGGCGACATGATTCCAAAAATATCAGACTTTGGTTTAGCTAGAATTGTTAAAGGTGGAGAAGATGATGAAGCTAACACAAACAGAGTTGTTGGAACTTATGGTTATATGCCACCTGAATATGCAATGGAGGGACTTTTCTCAGAGAAATCAGATGTCTATAGCTTTGGAGTTTTATTGCTAGAGATTGTTAGCGGAAGAAGAAATAGTAGCTTTTATAACAACGAGGATTCTCTTAGTCTCGTAGGCTTTGCATGGAAGCTATGGTTAGAGGACAACATTATATCTCTAATAGATCCAGAAGTATGGGATGCAGGTTTTGAGAGCAACATGTTGAGGTGTATACACATAGGACTTCTATGTGTGCAAGAACTTCCAAAAGAAAGACCAAATATATCAACTGTTGTTTTGATGCTTATAAGCGAGATTACACATCTTCCTCCTCCAGGGAAAGTTGCATTTGTTCTTAAGCAAAATTCAAGAAGTACACAATCTTCTCAAAAAAGTCATCAATCTAACTCAAACAATAATGTAACTCTAAGTGAAGTCCAAGGCAGATAA 2493 0.3518 MAFLNHNINHLFITFLVLFCTTFYSCYSSVNDTITSSKSLKDQVTITSNNTNFKLGFFSPINSTKRYLGIWYINETNNIWIANRDQPLKDSSGIVTIDKHGNLVILNNQNGTIIWTTNISNVTTNSTAQLDDLGNLILTDIDSGVKIWDSFSHPADAAVPTMRIAANKVTNKKIAFVSWKSENDPSSGHFSASLERLDAPEIFIWHDKNIHWRTGPWNGRVFLGSPRMLTEYLFGWSLIPDDGDGTTYLTYDFRDKTMFGILSLTYHGTLKLVEYQNKKEILRLGVDQNECDFYGKCGPFGNCDNSSIPICSCFDGFEPKNLVEWNLRNWTNGCVRKEGFNLKCEMLKINGSSEFKQDGFSVKHNMKVPDFIERSVSNQNNCAADCLANCSCMAHAYDPSIGCMYWSGNLIDLQKFPYGGVDLFIRVPAELAVADNKKEKGVNKSFIIIPIVGGIGALTLVICAYLLWRKCSARHKERHPQHSIMRGQKQMKLDELPLYDFKKLETATNNFHIDNMLGKGGFGPVYKGIMEDGNEIAVKRLSKASGQGIEEFMNEVLVISKLQHRNLVRILGCCVERGEQILVYEFMPNKSLDAFLFDPLQKKILDWRKRSNIIEGIARGILYLHRDSRLRIIHRDLKASNILLDGDMIPKISDFGLARIVKGGEDDEANTNRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNSSFYNNEDSLSLVGFAWKLWLEDNIISLIDPEVWDAGFESNMLRCIHIGLLCVQELPKERPNISTVVLMLISEITHLPPPGKVAFVLKQNSRSTQSSQKSHQSNSNNNVTLSEVQGR 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00411 830 SMART ntp_6 341 427 IPR003609 -
Trre15g00411 830 CDD STKc_IRAK 517 783 - -
Trre15g00411 830 Pfam Protein tyrosine and serine/threonine kinase 512 722 IPR001245 GO:0004672|GO:0006468
Trre15g00411 830 Gene3D - 25 153 IPR036426 -
Trre15g00411 830 SMART serkin_6 511 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00411 830 ProSiteProfiles PAN/Apple domain profile. 344 428 IPR003609 -
Trre15g00411 830 ProSiteProfiles Protein kinase domain profile. 511 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00411 830 SUPERFAMILY Protein kinase-like (PK-like) 496 818 IPR011009 -
Trre15g00411 830 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 185 IPR036426 -
Trre15g00411 830 Gene3D Transferase(Phosphotransferase) domain 1 587 789 - -
Trre15g00411 830 Gene3D Phosphorylase Kinase; domain 1 470 586 - -
Trre15g00411 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Trre15g00411 830 PIRSF SRK 4 830 IPR024171 GO:0004674
Trre15g00411 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 475 586 - -
Trre15g00411 830 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 774 - -
Trre15g00411 830 ProSiteProfiles Bulb-type lectin domain profile. 31 151 IPR001480 -
Trre15g00411 830 CDD PAN_AP_plant 348 428 - -
Trre15g00411 830 SMART blect_4 37 154 IPR001480 -
Trre15g00411 830 MobiDBLite consensus disorder prediction 806 830 - -
Trre15g00411 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 151 - -
Trre15g00411 830 CDD B_lectin 37 154 IPR001480 -
Trre15g00411 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 587 791 - -
Trre15g00411 830 Pfam PAN-like domain 356 413 IPR003609 -
Trre15g00411 830 Pfam D-mannose binding lectin 79 180 IPR001480 -
Trre15g00411 830 Pfam S-locus glycoprotein domain 212 321 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00411 Trre-Chr15 2875564 2878981 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00411 460 825 Receptor kinase-like Gene Family AT4G23150 53.005 7.63e-123 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre15g00411 PK_Tyr_Ser-Thr 4.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00411 - - ccaj:109790907 1162.9