Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00410 ATGGCTTTCCTAAGTCATAACATAAACCACTTGTTCATTACTTTCCTCATATTTTGCAGCTTTTGTTCATGCTATAGTTCCATCAATGACACCATTTCTTTATCAAAATCACTCAAAGACCAAGATACCATAACCTCAAACAGCACAAACTTCAAACTAGGATTTTTCAGCCCAATAAATTCAACAAACCGTTACCTAGGAATTTGGTTCATCAATGAAACAAACAACATATGGATTGCAAACAGAGACCAACCCCTCAAAGATTCAAATGGAATTGTCTCAATTCACAAAGATGGAAATCTTGTAATCTTGAACAAACAAAATGGTATCATCATTTGGTCAACAAACATTTCAACTTCAACAAATTCATCAGCTAAACTTGATGATTCAGGAAATTTGATTCTAAGAGACATAAATTCAGGAGAAACAATTTGGGACAGTTTTTCACATCCCGCAGATGCAGCTGTTCCAACCATGAGAATTGGTGCTAACAAATTAACAGGTAAGAAAATAACTTTTGTATCAAGAAAGAGTGAAAATGATCCTTCTTCAGGACATTTTTCAGCTAGTCTTGAAAGATTGGATGCACCAGAAGTTTTTATTTGGCATGATAAAAATATTCATTGGAGAACTGGTCCATGGAATGGAAGAGTTTTTATTGGATCACCGAGAATGTTAACCGAGTATTTATTCGGTTGGCGTTTAGACCATGACGGTGATGGAACGGATTATATAACTTACAATTTCGCCGACAAATCTAAGTTTGGAATTCTCTCATTGACATACCATGGAACACTTAAGTTGGTTGAGTATATAAATAAAAAAAAAATTCTTAGTCTCGAGGTTGATCAAAATGAGTGTGATTTTTATGGAAAATGTGGGCCATTTGGCAATTGCGATAATTCTAGTGTACCAATTTGTAGTTGTTTTGAAGGGTTTGAGCCAAAGAATTTGGCGGAATGGAATTTAAGAAATTGGACTAATGGTTGTGTTAGGAAGGAAGGATTGAACTTGAAGTGTGAGATTTTGAAGACTAATGGATCAAGTGAAGTTAAACAAGATAAGTTTTTGGTGAAACATAATATGAAAGTTCCTGATTTTATTTACCAACAAGATGGTTCTGTGGGATCAGATGGTAATCTAAATAAGTGTGGAACAAACTGTTTGGCAAATTGTTCTTGTGTGGCATATGCATATGATCCTTATATAGGTTGTATGTATTGGAGGGGAGAGTTAATTGATTTGCAGAAATTTCCTTATGGAGGAGTTGATCTCTTCATTCGTGTGCCAGCAGAATTAGTTGCAGATGCAGTTGTTAATAATAGTAATAAAAAGGAAAAAGGGCATAAAAAGAGCTTTTTAATAATTCCAATTGTTGTTGGGATAGGAGCATTTATCTTGGTTATATGTGCTTTTCTTTGGTGGAAGAAATCTTCTACTAGAGATAAAGGAAGACAACCTCAAAACTTGATTATAAGAGAAGAGAAACAAATGAAATTGGATGAGTTACCACTATATGATTTTGAAAAGCTTGAAATTGCCACAAACTATTTTCACTTTGGTAATATGCTTGGGAAGGGAGGTTTTGGCCCCGTATACAAGGGAATAATGGAAGATGGGCAAGAAATTGCGGTGAAAAGACTCTCAAAAGCATCTGGACAAGGAATGGAAGAATTCATGAATGAAGTAGTAGTGATTTCTAAGCTTCAACATCGAAACCTTGTAAGAATTCTTGGTTGTTGTGTCGAAAGGGGCGAGCAAATGTTGGTCTATGAATTCATGCCAAATAAGAGTTTAGATGCCTTTCTCTTTGATCCGCTGCAAAAGAAAATTTTAGATTGGAGAAAGAGGTCAAACATAATCGAAGGAATAGCTCGAGGTATACTCTATCTACATAGAGACTCAAGACTAAGGATCATACATAGAGATTTGAAAGCAAGCAACATCTTACTTGATGGTGACATGATTCCAAAAATAGCGGACTTTGGTTTAGCTAGAATTGTTAAAGGAGGAGAAGATGATGAAGCTAATACAAAAAGGGTTGTTGGAACTTATGGTTATATGCCGCCTGAATATGCAATGGAGGGACTTTTCTCTGAGAAATCAGATGTCTATAGTTTTGGAGTTTTACTACTAGAGATTGTTAGCGGAAGAAGAAATAGTAGCTTTAATCACAACGAGTGCTCTCTTAGCCTTGTCGGCTTTGCATGGAAGCTATGGTTAGAAGACAACATTATATCTCTAATTGATCCAGAAGTATGGGATCCATACTATGAGAGCAGCATGTTGAGATGCATACAAATAGGACTTCTATGTGTGCAAGAACTTCCAAGAGAAAGACCAAATATATCAAATGTTGTTTTGATGCTTATAAGTGAGATTACACATCTTCCTCCTCCAGGAAAAGTTGCATTTGTTCATAGACAAAATTCTAAAAGTACAGAATCTTCACAAAAAAGTCAGCAATCATCTAACTCAAACAACCATGTAACTTTGAGTGAAGTCCAAGGCAGTTCTATCAATGATACAATTACTTCATCCAAATCACTCAAAGACCAACAAACAATAACCTCAAACAATACAAACTTCAAGTTAGGATTTTTCAGCCCATTAAACTCAACAAACCGTTACCTAGGAATTTGGTACATCAATGAAACAAACAACTTTTGGATTGCAAATAGAGACCATCCCATCAAAGATTCAAATGGAATTGTCTCAATTCACAAAGATGGAAATCTTGTAATCTTGAACAAACAAAATGGTGTCATCATTTGGTCAACAAACATTTCAACTTCAACAAATTCATCAGCTCAACTTGATGATTCTGGAAACTTGATTCTAAGAGACATCAATTCAGGAGAAACACTTTGGAACAGTTTCTCACATCCTGCAGATGCAGCTGTTCCATCAATGAGAATTTCTGCTAATAGAGTAACAGGTAAAAAAATATCTTTTGTTTCAAAGAAAAGTGAAAATGATCCTTCTTCAGGAAATTTTTCGATTAGTCTTGAAAGATTAGATGCACCGGAAGTTTTTATTTGGCATAATAAAAATATTTATTGGAGAACCGGTCCATGGAATGGAAGGGTTTTTCTCGGGTCGCCTAGAATGACAACCGAGTATTTATTCGGTTGGAGTCTAGCTCACGATGCGGATGGAACTAACTATATAACTTACAATTTTGCGGCCACCAAAACTATGTTTGGAATTCTCTCATTGACACCACATGGAACACTTAAGTTGGTTGAGTATATGAATAGAAAGGAAATTTTTAGACTTGAGGTTGATCAAAATGAATGTGATTTTTATGGAAAATGTGGGCCATTTGGGAATTGTGATAATTCTAGTGTACCAATTTGTAGTTGTTTTGATGGGTTTGAGCCAAAGAATTTGGTGGAATGGAATTTAAGAAATTGGACTGATGGTTGTGTGAGGAAAGAAAGATTTAACTTGAAGTGTGAGATGATGAAGATTAATGGATCAAGTGAATTGAAACAAGATGGATTTTTGGTTCATCATTTTATGAAAGTTCCTGATTTTATTAAGAGATCAGATAGTAATCAAGATGAGTGTGGAACAGATTGTTTGAAAAATTGTTCTTGTTCTGCATATGCATATGATCCTTCTATAGGTTGTATGTATTGGAGTGGAGAGTTAATTGATTTGCAAAAATTTCCTAAAGGAGGAGTTGATCTCTTCATTCGTGTGCCCGCAGAATTAGTTGCAGTTGTAGCTCCCGATAATATAAAGAAAAAAGGGCGCAACAAGAGTACTTTAATCATTGCAATTTCCGGAGGGATAGGAGCATTTACCTTGATTATATGTGCTTATCTTTTGTGGAGGAAATGTTCTCCTAGGCGTAAAGGAAGACAACCGCTACTTACAATTAATAGTGAACATCAACAAATGAAATTGGATGAGCTACCACTATATGATTTTGAAAAGCTTGAAACCGCTACAAACAGCTTTCACTTTGGTAATATGCTTGGGAAGGGAGGTTTTGGTTCTGTATACAAGGGAATAATGCAAGACGGACAAGAAATTGCTGTAAAAAGATTGTCAAAAGCATCGGGACAGGGAATAGAAGAATTCATGAACGAAGTAGTAGTGATTTCTAAACTTCAACATCGCAATCTTGTACGACTTCATGGTTGTTGTGTTGAAAGGGGCGAGCAAATGTTGGTTTATGAGTTCATGCCAAATAAGAGTTTGGATGCCTTTCTTTTTGATCCACTGCAAAAGAAAAATTTAGATTGGAAAAAGCGGTTGACCATAATTGAAGGAATAGCTCGAGGTATACTCTATCTTCATAGAGACTCAAGACTAAGGATTATACATAGAGATTTAAAAGCAAGCAACATCTTACTTGACGGCGACATGATTCCAAAAATATCAGACTTTGGTTTAGCTAGAATTGTTAAAGGTGGAGAAGATGATGAAGCTAACACAAAAAGGGTTGTTGGAACTTATGGTTATATGCCGCCTGAATATGCAATGGAGGGGCTTTTCTCTGAAAAATCAGATGTTTATAGCTTTGGAGTTTTATTGCTAGAGATTGTTAGCGGACGAAGAAATAGTAGCTTTTATCACCACGAGGATTCCCTTAGCCTCGTAGGCTTTGCATGGAAGCTATGGTTAGAAGAAAACATTATATCTCTAGTTGATCAAGATGTATGGGATGAATTTTCTGAGAGCAGCATGTTAAGGTGCATGCACATAGGACTTCTATGTGTCCAAGAACTTCCAAGAGAAAGACCAAGTATATCAACTGTTGTTTTGATGCTTATAAGTGAGATCACACATCTTCCTCCTCCAGGGAAAGTTGCATTTGTTAACAAGCAAAATTCCACAAGTACAGAATCTTCTCAAAAAAGTAATCAATCTAATTCTAATAACAATGTCACTATGAGTGATGTCCAAGGCAGGTAA 4929 0.3575 MAFLSHNINHLFITFLIFCSFCSCYSSINDTISLSKSLKDQDTITSNSTNFKLGFFSPINSTNRYLGIWFINETNNIWIANRDQPLKDSNGIVSIHKDGNLVILNKQNGIIIWSTNISTSTNSSAKLDDSGNLILRDINSGETIWDSFSHPADAAVPTMRIGANKLTGKKITFVSRKSENDPSSGHFSASLERLDAPEVFIWHDKNIHWRTGPWNGRVFIGSPRMLTEYLFGWRLDHDGDGTDYITYNFADKSKFGILSLTYHGTLKLVEYINKKKILSLEVDQNECDFYGKCGPFGNCDNSSVPICSCFEGFEPKNLAEWNLRNWTNGCVRKEGLNLKCEILKTNGSSEVKQDKFLVKHNMKVPDFIYQQDGSVGSDGNLNKCGTNCLANCSCVAYAYDPYIGCMYWRGELIDLQKFPYGGVDLFIRVPAELVADAVVNNSNKKEKGHKKSFLIIPIVVGIGAFILVICAFLWWKKSSTRDKGRQPQNLIIREEKQMKLDELPLYDFEKLEIATNYFHFGNMLGKGGFGPVYKGIMEDGQEIAVKRLSKASGQGMEEFMNEVVVISKLQHRNLVRILGCCVERGEQMLVYEFMPNKSLDAFLFDPLQKKILDWRKRSNIIEGIARGILYLHRDSRLRIIHRDLKASNILLDGDMIPKIADFGLARIVKGGEDDEANTKRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNSSFNHNECSLSLVGFAWKLWLEDNIISLIDPEVWDPYYESSMLRCIQIGLLCVQELPRERPNISNVVLMLISEITHLPPPGKVAFVHRQNSKSTESSQKSQQSSNSNNHVTLSEVQGSSINDTITSSKSLKDQQTITSNNTNFKLGFFSPLNSTNRYLGIWYINETNNFWIANRDHPIKDSNGIVSIHKDGNLVILNKQNGVIIWSTNISTSTNSSAQLDDSGNLILRDINSGETLWNSFSHPADAAVPSMRISANRVTGKKISFVSKKSENDPSSGNFSISLERLDAPEVFIWHNKNIYWRTGPWNGRVFLGSPRMTTEYLFGWSLAHDADGTNYITYNFAATKTMFGILSLTPHGTLKLVEYMNRKEIFRLEVDQNECDFYGKCGPFGNCDNSSVPICSCFDGFEPKNLVEWNLRNWTDGCVRKERFNLKCEMMKINGSSELKQDGFLVHHFMKVPDFIKRSDSNQDECGTDCLKNCSCSAYAYDPSIGCMYWSGELIDLQKFPKGGVDLFIRVPAELVAVVAPDNIKKKGRNKSTLIIAISGGIGAFTLIICAYLLWRKCSPRRKGRQPLLTINSEHQQMKLDELPLYDFEKLETATNSFHFGNMLGKGGFGSVYKGIMQDGQEIAVKRLSKASGQGIEEFMNEVVVISKLQHRNLVRLHGCCVERGEQMLVYEFMPNKSLDAFLFDPLQKKNLDWKKRLTIIEGIARGILYLHRDSRLRIIHRDLKASNILLDGDMIPKISDFGLARIVKGGEDDEANTKRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNSSFYHHEDSLSLVGFAWKLWLEENIISLVDQDVWDEFSESSMLRCMHIGLLCVQELPRERPSISTVVLMLISEITHLPPPGKVAFVNKQNSTSTESSQKSNQSNSNNNVTMSDVQGR 1642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00410 1642 SMART blect_4 35 151 IPR001480 -
Trre15g00410 1642 SMART blect_4 847 963 IPR001480 -
Trre15g00410 1642 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1399 1603 - -
Trre15g00410 1642 MobiDBLite consensus disorder prediction 807 832 - -
Trre15g00410 1642 SUPERFAMILY Protein kinase-like (PK-like) 503 819 IPR011009 -
Trre15g00410 1642 CDD STKc_IRAK 524 790 - -
Trre15g00410 1642 ProSiteProfiles Bulb-type lectin domain profile. 29 148 IPR001480 -
Trre15g00410 1642 ProSiteProfiles Bulb-type lectin domain profile. 841 960 IPR001480 -
Trre15g00410 1642 FunFam Os04g0303100 protein 68 208 - -
Trre15g00410 1642 ProSiteProfiles Protein kinase domain profile. 1323 1600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00410 1642 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 838 960 - -
Trre15g00410 1642 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1290 1398 - -
Trre15g00410 1642 Pfam S-locus glycoprotein domain 1021 1130 IPR000858 GO:0048544
Trre15g00410 1642 Pfam S-locus glycoprotein domain 209 317 IPR000858 GO:0048544
Trre15g00410 1642 SMART serkin_6 518 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00410 1642 SMART serkin_6 1323 1597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00410 1642 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 216 IPR036426 -
Trre15g00410 1642 Pfam Protein tyrosine and serine/threonine kinase 1324 1593 IPR001245 GO:0004672|GO:0006468
Trre15g00410 1642 Pfam Protein tyrosine and serine/threonine kinase 519 787 IPR001245 GO:0004672|GO:0006468
Trre15g00410 1642 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 781 - -
Trre15g00410 1642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Trre15g00410 1642 FunFam Os04g0303100 protein 880 1020 - -
Trre15g00410 1642 ProSiteProfiles PAN/Apple domain profile. 340 430 IPR003609 -
Trre15g00410 1642 CDD STKc_IRAK 1329 1595 - -
Trre15g00410 1642 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 483 593 - -
Trre15g00410 1642 ProSiteProfiles PAN/Apple domain profile. 1153 1237 IPR003609 -
Trre15g00410 1642 Gene3D Transferase(Phosphotransferase) domain 1 594 796 - -
Trre15g00410 1642 Gene3D Transferase(Phosphotransferase) domain 1 1399 1602 - -
Trre15g00410 1642 SUPERFAMILY Protein kinase-like (PK-like) 1308 1627 IPR011009 -
Trre15g00410 1642 SMART ntp_6 1164 1236 IPR003609 -
Trre15g00410 1642 SMART ntp_6 351 429 IPR003609 -
Trre15g00410 1642 CDD B_lectin 35 151 IPR001480 -
Trre15g00410 1642 CDD B_lectin 847 963 IPR001480 -
Trre15g00410 1642 CDD PAN_AP_plant 1157 1237 - -
Trre15g00410 1642 SUPERFAMILY alpha-D-mannose-specific plant lectins 878 1028 IPR036426 -
Trre15g00410 1642 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 148 - -
Trre15g00410 1642 ProSiteProfiles Protein kinase domain profile. 518 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00410 1642 Gene3D - 836 961 IPR036426 -
Trre15g00410 1642 Gene3D - 23 149 IPR036426 -
Trre15g00410 1642 Pfam D-mannose binding lectin 889 989 IPR001480 -
Trre15g00410 1642 Pfam D-mannose binding lectin 77 177 IPR001480 -
Trre15g00410 1642 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 594 798 - -
Trre15g00410 1642 Pfam PAN-like domain 1165 1222 IPR003609 -
Trre15g00410 1642 Pfam PAN-like domain 352 415 IPR003609 -
Trre15g00410 1642 CDD PAN_AP_plant 346 430 - -
Trre15g00410 1642 MobiDBLite consensus disorder prediction 1610 1642 - -
Trre15g00410 1642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1444 1456 IPR008271 GO:0004672|GO:0006468
Trre15g00410 1642 ProSitePatterns Protein kinases ATP-binding region signature. 1329 1351 IPR017441 GO:0005524
Trre15g00410 1642 Gene3D Phosphorylase Kinase; domain 1 492 593 - -
Trre15g00410 1642 Gene3D Phosphorylase Kinase; domain 1 1297 1398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00410 Trre-Chr15 2860471 2871776 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00410 440 818 Receptor kinase-like Gene Family AT4G23190 49.744 1.06e-113 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre15g00410 PK_Tyr_Ser-Thr 3.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00410 - - cave:132169971 1612.43