Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00409 ATGGCTTTCCTAAGTCATAACATAAACCACTTGTTCATTACTTTCCTCATATTTTGCAGCTTTTGTTCATGCTATAGTTCCATCAATGACACCATTTCTTTATCAAAATCACTCAAAGACCAAGATACCATAACCTCAAACAGCACAAACTTCAAACTAGGATTTTTCAGCCCAATAAATTCAACAAACCGTTACCTAGGAATTTGGTTCATCAATGAAACAAACAACATATGGATTGCAAACAGAGACCAACCCCTCAAAGATTCAAATGGAATTGTCTCAATTCACAAAGATGGAAATCTTGTAATCTTGAACAAACAAAATGGTATCATCATTTGGTCAACAAACATTTCAACTTCAACAAATTCATCAGCTAAACTTGATGATTCAGGAAATTTGATTCTAAGAGACATAAATTCAGGAGAAACAATTTGGGACAGTTTTTCACATCCCGCAGATGCAGCTGTTCCAACCATGAGAATTGGTGCTAACAAATTAACAGGTAAGAAAATAACTTTTGTATCAAGAAAGAGTGAAAATGATCCTTCTTCAGGACATTTTTCAGCTAGTCTTGAAAGATTGGATGCACCAGAAGTTTTTATTTGGCATGATAAAAATATTCATTGGAGAACTGGTCCATGGAATGGAAGAGTTTTTATTGGATCACCGAGAATGTTAACCGAGTATTTATTCGGTTGGCGTTTAGACCATGACGGTGATGGAACGGATTATATAACTTACAATTTCGCCGACAAATCTAAGTTTGGAATTCTCTCATTGACATACCATGGAACACTTAAGTTGGTTGAGTATATAAATAAAAAAAAAATTCTTAGTCTCGAGGTTGATCAAAATGAGTGTGATTTTTATGGAAAATGTGGGCCATTTGGCAATTGCGATAATTCTAGTGTACCAATTTGTAGTTGTTTTGAAGGGTTTGAGCCAAAGAATTTGGCGGAATGGAATTTAAGAAATTGGACTAATGGTTGTGTTAGGAAGGAAGGATTGAACTTGAAGTGTGAGATTTTGAAGACTAATGGATCAAGTGAAGTTAAACAAGATAAGTTTTTGGTGAAACATAATATGAAAGTTCCTGATTTTATTTACCAACAAGATGGTTCTGTGGGATCAGATGGTAATCTAAATAAGTGTGGAACAAACTGTTTGGCAAATTGTTCTTGTGTGGCATATGCATATGATCCTTATATAGGTTGTATGTATTGGAGGGGAGAGTTAATTGATTTGCAGAAATTTCCTTATGGAGGAGTTGATCTCTTCATTCGTGTGCCAGCAGAATTAGATGCAGTTGTTAATAATAGTAATAAAAAGGAAAAAGGGCATAAAAAGAGCTTTTTAATAATTCCAATTGTTGTTGGGATAGGAGCATTTATCTTGGTTATATGTGCTTTTCTTTGGTGGAAGAAATCTTCTACTAGAGATAAAGGAAGACAACCTCAAAACTTGATTATAAGAGAAGAGAAACAAATGAAATTGGATGAGTTACCACTATATGATTTTGAAAAGCTTGAAATTGCCACAAACTATTTTCACTTTGGTAATATGCTTGGGAAGGGAGGTTTTGGCCCCGTATACAAGGGAATAATGGAAGATGGGCAAGAAATTGCGGTGAAAAGACTCTCAAAAGCATCTGGACAAGGAATGGAAGAATTCATGAATGAAGTAGTAGTGATTTCTAAGCTTCAACATCGAAACCTTGTAAGAATTCTTGGTTGTTGTGTCGAAAGGGGCGAGCAAATGTTGGTCTATGAATTCATGCCAAATAAGAGTTTAGATGCCTTTCTCTTTGATCCGCTGCAAAAGAAAATTTTAGATTGGAGAAAGAGGTCAAACATAATCGAAGGAATAGCTCGAGGTATACTCTATCTACATAGAGACTCAAGACTAAGGATCATACATAGAGATTTGAAAGCAAGCAACATCTTACTTGATGGTGACATGATTCCAAAAATAGCGGACTTTGGTTTAGCTAGAATTGTTAAAGGAGGAGAAGATGATGAAGCTAATACAAAAAGGGTTGTTGGAACTTATGGTTATATGCCGCCTGAATATGCAATGGAGGGACTTTTCTCTGAGAAATCAGATGTCTATAGTTTTGGAGTTTTACTACTAGAGATTGTTAGCGGAAGAAGAAATAGTAGCTTTAATCACAACGAGTGCTCTCTTAGCCTTGTCGGCTTTGCATGGAAGCTATGGTTAGAAGACAACATTATATCTCTAATTGATCCAGAAGTATGGGATCCATACTATGAGAGCAGCATGTTGAGATGCATACAAATAGGACTTCTATGTGTGCAAGAACTTCCAAGAGAAAGACCAAATATATCAAATGTTGTTTTGATGCTTATAAGTGAGATTACACATCTTCCTCCTCCAGGAAAAGTTGCATTTGTTCATAGACAAAATTCTAAAAGTACAGAATCTTCACAAAAAAGTCAGCAATCATCTAACTCAAACAACCATGTAACTTTGAGTGAAGTCCAAGGCAGTTCTATCAATGATACAATTACTTCATCCAAATCACTCAAAGACCAACAAACAATAACCTCAAACAATACAAACTTCAAGTTAGGATTTTTCAGCCCATTAAACTCAACAAACCGTTACCTAGGAATTTGGTACATCAATGAAACAAACAACTTTTGGATTGCAAATAGAGACCATCCCATCAAAGATTCAAATGGAATTGTCTCAATTCACAAAGATGGAAATCTTGTAATCTTGAACAAACAAAATGGTGTCATCATTTGGTCAACAAACATTTCAACTTCAACAAATTCATCAGCTCAACTTGATGATTCTGGAAACTTGATTCTAAGAGACATCAATTCAGGAGAAACACTTTGGAACAGTTTCTCACATCCTGCAGATGCAGCTGTTCCATCAATGAGAATTTCTGCTAATAGAGTAACAGGTAAAAAAATATCTTTTGTTTCAAAGAAAAGTGAAAATGATCCTTCTTCAGGAAATTTTTCGATTAGTCTTGAAAGATTAGATGCACCGGAAGTTTTTATTTGGCATAATAAAAATATTTATTGGAGAACCGGTCCATGGAATGGAAGGGTTTTTCTCGGGTCGCCTAGAATGACAACCGAGTATTTATTCGGTTGGAGTCTAGCTCACGATGCGGATGGAACTAACTATATAACTTACAATTTTGCGGCCACCAAAACTATGTTTGGAATTCTCTCATTGACACCACATGGAACACTTAAGTTGGTTGAGTATATGAATAGAAAGGAAATTTTTAGACTTGAGGTTGATCAAAATGAATGTGATTTTTATGGAAAATGTGGGCCATTTGGGAATTGTGATAATTCTAGTGTACCAATTTGTAGTTGTTTTGATGGGTTTGAGCCAAAGAATTTGGTGGAATGGAATTTAAGAAATTGGACTGATGGTTGTGTGAGGAAAGAAAGATTTAACTTGAAGTGTGAGATGATGAAGATTAATGGATCAAGTGAATTGAAACAAGATGGATTTTTGGTTCATCATTTTATGAAAGTTCCTGATTTTATTAAGAGATCAGATAGTAATCAAGATGAGTGTGGAACAGATTGTTTGAAAAATTGTTCTTGTTCTGCATATGCATATGATCCTTCTATAGGTTGTATGTATTGGAGTGGAGAGTTAATTGATTTGCAAAAATTTCCTAAAGGAGGAGTTGATCTCTTCATTCGTGTGCCCGCAGAATTAGTTGCAGTTGTAGCTCCCGATAATATAAAGAAAAAAGGGCGCAACAAGAGTACTTTAATCATTGCAATTTCCGGAGGGATAGGAGCATTTACCTTGATTATATGTGCTTATCTTTTGTGGAGGAAATGTTCTCCTAGGCGTAAAGGAAGACAACCGCTACTTACAATTAATAGTGAACATCAACAAATGAAATTGGATGAGCTACCACTATATGATTTTGAAAAGCTTGAAACCGCTACAAACAGCTTTCACTTTGGTAATATGCTTGGGAAGGGAGGTTTTGGTTCTGTATACAAGGGAATAATGCAAGACGGACAAGAAATTGCTGTAAAAAGATTGTCAAAAGCATCGGGACAGGGAATAGAAGAATTCATGAACGAAGTAGTAGTGATTTCTAAACTTCAACATCGCAATCTTGTACGACTTCATGGTTGTTGTGTTGAAAGGGGCGAGCAAATGTTGGTTTATGAGTTCATGCCAAATAAGAGTTTGGATGCCTTTCTTTTTGATCCACTGCAAAAGAAAAATTTAGATTGGAAAAAGCGGTTGACCATAATTGAAGGAATAGCTCGAGGTATACTCTATCTTCATAGAGACTCAAGACTAAGGATTATACATAGAGATTTAAAAGCAAGCAACATCTTACTTGACGGCGACATGATTCCAAAAATATCAGACTTTGGTTTAGCTAGAATTGTTAAAGGTGGAGAAGATGATGAAGCTAACACAAAAAGGGTTGTTGGAACTTATGGTTATATGCCGCCTGAATATGCAATGGAGGGGCTTTTCTCTGAAAAATCAGATGTTTATAGCTTTGGAGTTTTATTGCTAGAGATTGTTAGCGGACGAAGAAATAGTAGCTTTTATCACCACGAGGATTCCCTTAGCCTCGTAGGCTTTGCATGGAAGCTATGGTTAGAAGAAAACATTATATCTCTAGTTGATCAAGATGTATGGGATGAATTTTCTGAGAGCAGCATGTTAAGGTGCATGCACATAGGACTTCTATGTGTCCAAGAACTTCCAAGAGAAAGACCAAGTATATCAACTGTTGTTTTGATGCTTATAAGTGAGATCACACATCTTCCTCCTCCAGGGAAAGTTGCATTTGTTAACAAGCAAAATTCCACAAGTACAGAATCTTCTCAAAAAAGTAATCAATCTAATTCTAATAACAATGTCACTATGAGTGATGTCCAAGGCAGGTAA 4923 0.3573 MAFLSHNINHLFITFLIFCSFCSCYSSINDTISLSKSLKDQDTITSNSTNFKLGFFSPINSTNRYLGIWFINETNNIWIANRDQPLKDSNGIVSIHKDGNLVILNKQNGIIIWSTNISTSTNSSAKLDDSGNLILRDINSGETIWDSFSHPADAAVPTMRIGANKLTGKKITFVSRKSENDPSSGHFSASLERLDAPEVFIWHDKNIHWRTGPWNGRVFIGSPRMLTEYLFGWRLDHDGDGTDYITYNFADKSKFGILSLTYHGTLKLVEYINKKKILSLEVDQNECDFYGKCGPFGNCDNSSVPICSCFEGFEPKNLAEWNLRNWTNGCVRKEGLNLKCEILKTNGSSEVKQDKFLVKHNMKVPDFIYQQDGSVGSDGNLNKCGTNCLANCSCVAYAYDPYIGCMYWRGELIDLQKFPYGGVDLFIRVPAELDAVVNNSNKKEKGHKKSFLIIPIVVGIGAFILVICAFLWWKKSSTRDKGRQPQNLIIREEKQMKLDELPLYDFEKLEIATNYFHFGNMLGKGGFGPVYKGIMEDGQEIAVKRLSKASGQGMEEFMNEVVVISKLQHRNLVRILGCCVERGEQMLVYEFMPNKSLDAFLFDPLQKKILDWRKRSNIIEGIARGILYLHRDSRLRIIHRDLKASNILLDGDMIPKIADFGLARIVKGGEDDEANTKRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNSSFNHNECSLSLVGFAWKLWLEDNIISLIDPEVWDPYYESSMLRCIQIGLLCVQELPRERPNISNVVLMLISEITHLPPPGKVAFVHRQNSKSTESSQKSQQSSNSNNHVTLSEVQGSSINDTITSSKSLKDQQTITSNNTNFKLGFFSPLNSTNRYLGIWYINETNNFWIANRDHPIKDSNGIVSIHKDGNLVILNKQNGVIIWSTNISTSTNSSAQLDDSGNLILRDINSGETLWNSFSHPADAAVPSMRISANRVTGKKISFVSKKSENDPSSGNFSISLERLDAPEVFIWHNKNIYWRTGPWNGRVFLGSPRMTTEYLFGWSLAHDADGTNYITYNFAATKTMFGILSLTPHGTLKLVEYMNRKEIFRLEVDQNECDFYGKCGPFGNCDNSSVPICSCFDGFEPKNLVEWNLRNWTDGCVRKERFNLKCEMMKINGSSELKQDGFLVHHFMKVPDFIKRSDSNQDECGTDCLKNCSCSAYAYDPSIGCMYWSGELIDLQKFPKGGVDLFIRVPAELVAVVAPDNIKKKGRNKSTLIIAISGGIGAFTLIICAYLLWRKCSPRRKGRQPLLTINSEHQQMKLDELPLYDFEKLETATNSFHFGNMLGKGGFGSVYKGIMQDGQEIAVKRLSKASGQGIEEFMNEVVVISKLQHRNLVRLHGCCVERGEQMLVYEFMPNKSLDAFLFDPLQKKNLDWKKRLTIIEGIARGILYLHRDSRLRIIHRDLKASNILLDGDMIPKISDFGLARIVKGGEDDEANTKRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNSSFYHHEDSLSLVGFAWKLWLEENIISLVDQDVWDEFSESSMLRCMHIGLLCVQELPRERPSISTVVLMLISEITHLPPPGKVAFVNKQNSTSTESSQKSNQSNSNNNVTMSDVQGR 1640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00409 1640 ProSitePatterns Protein kinases ATP-binding region signature. 1327 1349 IPR017441 GO:0005524
Trre15g00409 1640 ProSiteProfiles Bulb-type lectin domain profile. 839 958 IPR001480 -
Trre15g00409 1640 ProSiteProfiles Bulb-type lectin domain profile. 29 148 IPR001480 -
Trre15g00409 1640 SMART ntp_6 1162 1234 IPR003609 -
Trre15g00409 1640 SMART ntp_6 351 429 IPR003609 -
Trre15g00409 1640 Pfam D-mannose binding lectin 77 177 IPR001480 -
Trre15g00409 1640 Pfam D-mannose binding lectin 887 987 IPR001480 -
Trre15g00409 1640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Trre15g00409 1640 ProSiteProfiles Protein kinase domain profile. 1321 1598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00409 1640 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 216 IPR036426 -
Trre15g00409 1640 SMART blect_4 35 151 IPR001480 -
Trre15g00409 1640 SMART blect_4 845 961 IPR001480 -
Trre15g00409 1640 SUPERFAMILY Protein kinase-like (PK-like) 1306 1625 IPR011009 -
Trre15g00409 1640 Pfam PAN-like domain 1163 1220 IPR003609 -
Trre15g00409 1640 Pfam PAN-like domain 352 415 IPR003609 -
Trre15g00409 1640 ProSiteProfiles PAN/Apple domain profile. 340 430 IPR003609 -
Trre15g00409 1640 Gene3D Transferase(Phosphotransferase) domain 1 592 794 - -
Trre15g00409 1640 Gene3D Transferase(Phosphotransferase) domain 1 1397 1600 - -
Trre15g00409 1640 Pfam Protein tyrosine and serine/threonine kinase 1322 1591 IPR001245 GO:0004672|GO:0006468
Trre15g00409 1640 Pfam Protein tyrosine and serine/threonine kinase 517 785 IPR001245 GO:0004672|GO:0006468
Trre15g00409 1640 SUPERFAMILY Protein kinase-like (PK-like) 501 817 IPR011009 -
Trre15g00409 1640 CDD B_lectin 35 151 IPR001480 -
Trre15g00409 1640 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 779 - -
Trre15g00409 1640 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 836 958 - -
Trre15g00409 1640 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 148 - -
Trre15g00409 1640 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1288 1396 - -
Trre15g00409 1640 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 481 591 - -
Trre15g00409 1640 CDD PAN_AP_plant 346 430 - -
Trre15g00409 1640 CDD B_lectin 845 961 IPR001480 -
Trre15g00409 1640 Pfam S-locus glycoprotein domain 1019 1128 IPR000858 GO:0048544
Trre15g00409 1640 Pfam S-locus glycoprotein domain 209 317 IPR000858 GO:0048544
Trre15g00409 1640 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 592 796 - -
Trre15g00409 1640 SUPERFAMILY alpha-D-mannose-specific plant lectins 876 1026 IPR036426 -
Trre15g00409 1640 Gene3D Phosphorylase Kinase; domain 1 1295 1396 - -
Trre15g00409 1640 Gene3D Phosphorylase Kinase; domain 1 490 591 - -
Trre15g00409 1640 ProSiteProfiles PAN/Apple domain profile. 1151 1235 IPR003609 -
Trre15g00409 1640 Gene3D - 834 959 IPR036426 -
Trre15g00409 1640 Gene3D - 23 149 IPR036426 -
Trre15g00409 1640 CDD STKc_IRAK 522 788 - -
Trre15g00409 1640 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1397 1601 - -
Trre15g00409 1640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1442 1454 IPR008271 GO:0004672|GO:0006468
Trre15g00409 1640 ProSiteProfiles Protein kinase domain profile. 516 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00409 1640 MobiDBLite consensus disorder prediction 1608 1640 - -
Trre15g00409 1640 CDD STKc_IRAK 1327 1593 - -
Trre15g00409 1640 SMART serkin_6 516 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00409 1640 SMART serkin_6 1321 1595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00409 1640 CDD PAN_AP_plant 1155 1235 - -
Trre15g00409 1640 MobiDBLite consensus disorder prediction 805 830 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00409 Trre-Chr15 2860471 2871776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00409 438 816 Receptor kinase-like Gene Family AT4G23190 49.744 1.06e-113 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre15g00409 PK_Tyr_Ser-Thr 3.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00409 - - cave:132169971 1614.74