Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00376 ATGACTTCCTCTGCAACTAAATTCTACACCATCTTCATGTTCATATGTCTTGCACTTCTCCTTATTAGCACAATGGAGGTGGAAGCAAAAGTTTGTCAAAAGAGAAGCAAAACATGGACAGGGCCTTGTATTGTAACGGGAAACTGTAAAAAACAGTGTATCGAAGTGGAAAAAGCAACTTTTGGTGCTTGTCATCATCAAGGCTTTGGTTTTGCTTGCTTCTGCTACTTCAAATGCTGA 240 0.3958 MTSSATKFYTIFMFICLALLLISTMEVEAKVCQKRSKTWTGPCIVTGNCKKQCIEVEKATFGACHHQGFGFACFCYFKC 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00376 79 PANTHER DEFENSIN-LIKE PROTEIN 1 1 79 - -
Trre15g00376 79 SUPERFAMILY Scorpion toxin-like 29 79 IPR036574 -
Trre15g00376 79 Pfam Gamma-thionin family 30 79 - -
Trre15g00376 79 ProSitePatterns Gamma-thionins family signature. 30 53 IPR008176 GO:0006952
Trre15g00376 79 Gene3D - 31 79 IPR036574 -
Trre15g00376 79 SMART gth_4 31 79 IPR003614 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00376 Trre-Chr15 2589750 2590102 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00376 9 79 Plant Defensins Gene Families AT1G19610 52.703 1.16e-23 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00376 - - mtr:25500300 144.821