Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00334 ATGGAAGGTGATGGAATTGATGATGTGAAGATTCCTTTGTTACAGTCCTCTACAGATGAAAACGTCGTCGTTAGGACGGTTACGTTTCAAATTAGCGATATTAAGTGTGCTTCATGTGTTAATTCTATTGAATCGGCTCTTAAGAATCTTAACGGTGTTAGAAGTATTGCAGTTTCGTCGCTTGATGGTCGTGCCGCCGTTAAATTTGTTCCTAAGCTCATAACTGCAAAAAGAATAAAAGAAAGCATAGAAGAGAGTGGGTTTAAGGTTAACGAGGTTCATGATCATGACCAAGATATATCAGTGTGCCGAGTTAGGATTAAAGGAATGGCATGCACAAGTTGTTCTGAGTCTGTTGAGAAAGCACTTCAAATGATTGATGGAGTGAAAAGGGCAATTGTTGGTTTAGCATTAGAGGAGGCGAAAGTGCATTATGATCCTAGCCTTGTCGATCCTGAAAAGATAATTGAAGCGGTAGAAGATGCAGGCTTTGGAGCAGAGCTTATTAGTTCTGGGAATGACGCGAACAAAGTTCATCTAAAACTCGAAGGGATTGATTCTGAAGAAGATGCTAATGTGTTAGTGTCCTATCTTGAGTTAGCTGCGGGTGTGAATCGTGTTGAAATGAATTTGTTAGAACTTATAGTTACCGTTAGCTATGATCCAGATTTTACAGGTCCTAGAACTCTCATTCACTGTGTTCAGGAAGCTAGCCGTGGCTCCAAGGTATATCAAGCAACTTTGTATTCTCCTTCTGGACGAAGAGAAAAGGATAAGGTGAATGAAATTCGTATGTATAGGGATCAGTTTTTGTTCAGCTGCTTGTTTTCTGTACCTGTCTTTATGTTTGCCATGGTGCTTCCCATGCTTCCTCCATATGGCAACTGGTTGAACTATAAGGTCCACAATATGCTTACTCTTGGGTTGTTTTTAAGATGGATCCTTTGCACGCCTGTGCAGTTCATAGTTGGAAAAAGGTTCTATGTGGGATCATTTCATGCACTGAGGAGAAGATCTGCTAACATGGATGTGCTGGTTGCGTTAGGCACTAATGCTGCTTATTTTTACTCATTATATATTGTAATAAAAGCACTGACTTCAGACACATTTCAAGGACAAGACTTCTTTGAAACCAGTTCCATGTTGATATCCTTTATTCTATTAGGAAAGTATTTGGAGATTGTGGCTAAAGGAAAAACATCAGATGCTTTAGGAAAGCTGACACAACTTGTTCCTGATAAAGCTTATTTAGTAGAAATTGATACTGATGCAAATATCATCACAGAGACAGAAATTGACACTCAACTTATACAAAAGAATGACATAATTAAGATTGTGCCTGGGGCCAAAATTCCCGTTGATGGTATTGTTATAAAAGGACAAAGCTATGCAAATGAAAGTATGATCACTGGAGAGGCAATACCCATTGCCAAAAGTCCAGGAGACAAGGTTATCAGTGGAACGATCAATGAGAATGGCTGCGTGTTGGTTAAGGCTACACATGTTGGATCAGACACTGCCCTTTCTCAAATTGTTCAACTTGTAGAAGCTGCTCAACTTGCCAAAGCACCAGTTCAAAAACTTGCGGATGATATTTCAAGGGTTTTTGTTCCAATAGTGGTTGTTGTAGCACTCACAACTTGGCTGGGGTGGTTCATTCCGGGGAAAGCTGGATTTTACCCTAAACATTGGATACCAAAAGGAATGGATGCATTTGAGCTTGCTTTGCAGTTTGCTATTTCTGTGTTAGTTGTTGCTTGTCCATGTGCTCTGGGTCTAGCTACACCAACTGCAGTTATGGTGGCTTCGGGCATAGGTGCTTCTCAAGGAGTGCTCATCAAGGGTGGAGATGCACTGGAGAAGGCACACAAGGTAAAAACTATTGTATTTGACAAGACTGGGACACTAACAGTTGGGAAGCCCGTAGTAGTTAGTGCGGTACTGTTTCATGAATTTTCTATGGAGGTGTTATGTGACATGGCAATTTCTGTGGAGGCAAGTAGCGAACACCCCATAGCAAAAGCTGTTGTTGCACATGCAAAGAAGCTGCGCAAGAATTTCGGTTCTTGCCCTGAGGAAGTGCCAGATGTTGTTGATTTTGAGGTACACATGGGAGCCGGGGTAAGTGGAAAAGTTGGTGATAGAACAGTTTTAGTTGGAAACAAGAGACTCATGCACGCTTGTAATGTTAAAATATCTTCCGAGGCTGAGAAGTACATCTCTCAAAATGAGATTCTGGCTAGAACTTGTGTTTTAGTTTCAATTGATGGAAAGATTGCTGGAGCATTCTCTGTATCCGACCCAGTAAAGCCAGAGGCTAAACGTGTTATATCATTTCTCCACTCCATGGGCATCACAAGTGTCATTGTGACTGGTGATAACCATGCTACTGCAACTGCTATTGCAAATGAAGTTGGTATTGATCAGGTTTTTGCGGAGACAGATCCGGTAGGCAAAGCTGATAAGGTGAAAGAGTTGCAGATGAAGGGAATGACTGTGGCAATGGTAGGTGATGGAATAAACGACTCTCCGGCTTTAGTTGCTGCTGATGTTGGTATGGCAATTGGTGCTGGAACTGATGTAGCTATAGAAGCTGCTGATATAGTTCTGATCAAAAGCAGTTTGGAAGATGTGATTACAGCCATAGATCTATCTAGAAAGACCATGTCTCGTATCAGGCTGAATTACATTTGGGCTCTTGGTTACAACATTTTAGGCATGCCAATTGCTGCTGGTGTTTTGTACCCATTTACCGGAATCAGATTGCCACCATGGCTTGCTGGTGCTTGCATGGCTGCATCTTCTCTTAGTGTGGTTTCTTCTTCTCTTTTGCTGCAGTTCTATAAAAAACCTTTGCATGTAGAGGCCATTTAA 2874 0.4144 MEGDGIDDVKIPLLQSSTDENVVVRTVTFQISDIKCASCVNSIESALKNLNGVRSIAVSSLDGRAAVKFVPKLITAKRIKESIEESGFKVNEVHDHDQDISVCRVRIKGMACTSCSESVEKALQMIDGVKRAIVGLALEEAKVHYDPSLVDPEKIIEAVEDAGFGAELISSGNDANKVHLKLEGIDSEEDANVLVSYLELAAGVNRVEMNLLELIVTVSYDPDFTGPRTLIHCVQEASRGSKVYQATLYSPSGRREKDKVNEIRMYRDQFLFSCLFSVPVFMFAMVLPMLPPYGNWLNYKVHNMLTLGLFLRWILCTPVQFIVGKRFYVGSFHALRRRSANMDVLVALGTNAAYFYSLYIVIKALTSDTFQGQDFFETSSMLISFILLGKYLEIVAKGKTSDALGKLTQLVPDKAYLVEIDTDANIITETEIDTQLIQKNDIIKIVPGAKIPVDGIVIKGQSYANESMITGEAIPIAKSPGDKVISGTINENGCVLVKATHVGSDTALSQIVQLVEAAQLAKAPVQKLADDISRVFVPIVVVVALTTWLGWFIPGKAGFYPKHWIPKGMDAFELALQFAISVLVVACPCALGLATPTAVMVASGIGASQGVLIKGGDALEKAHKVKTIVFDKTGTLTVGKPVVVSAVLFHEFSMEVLCDMAISVEASSEHPIAKAVVAHAKKLRKNFGSCPEEVPDVVDFEVHMGAGVSGKVGDRTVLVGNKRLMHACNVKISSEAEKYISQNEILARTCVLVSIDGKIAGAFSVSDPVKPEAKRVISFLHSMGITSVIVTGDNHATATAIANEVGIDQVFAETDPVGKADKVKELQMKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGVLYPFTGIRLPPWLAGACMAASSLSVVSSSLLLQFYKKPLHVEAI 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00334 957 NCBIfam copper ion binding protein 105 165 IPR006122 GO:0005507
Trre15g00334 957 NCBIfam copper ion binding protein 27 90 IPR006122 GO:0005507
Trre15g00334 957 SUPERFAMILY HMA, heavy metal-associated domain 172 244 IPR036163 GO:0046872
Trre15g00334 957 CDD HMA 105 167 IPR006121 GO:0046872
Trre15g00334 957 ProSiteProfiles Heavy-metal-associated domain profile. 176 242 IPR006121 GO:0046872
Trre15g00334 957 Gene3D - 101 172 - -
Trre15g00334 957 FunFam Copper-transporting ATPase HMA5 100 171 - -
Trre15g00334 957 SUPERFAMILY HMA, heavy metal-associated domain 98 172 IPR036163 GO:0046872
Trre15g00334 957 SFLD Haloacid Dehalogenase 611 888 - -
Trre15g00334 957 ProSitePatterns E1-E2 ATPases phosphorylation site. 631 637 IPR018303 -
Trre15g00334 957 ProSiteProfiles Heavy-metal-associated domain profile. 25 91 IPR006121 GO:0046872
Trre15g00334 957 CDD HMA 28 90 IPR006121 GO:0046872
Trre15g00334 957 Pfam haloacid dehalogenase-like hydrolase 625 850 - -
Trre15g00334 957 PRINTS P-type cation-transporting ATPase superfamily signature 629 643 - -
Trre15g00334 957 PRINTS P-type cation-transporting ATPase superfamily signature 465 479 - -
Trre15g00334 957 PRINTS P-type cation-transporting ATPase superfamily signature 761 772 - -
Trre15g00334 957 PRINTS P-type cation-transporting ATPase superfamily signature 859 871 - -
Trre15g00334 957 PRINTS P-type cation-transporting ATPase superfamily signature 836 855 - -
Trre15g00334 957 PRINTS P-type cation-transporting ATPase superfamily signature 783 793 - -
Trre15g00334 957 SUPERFAMILY HMA, heavy metal-associated domain 25 95 IPR036163 GO:0046872
Trre15g00334 957 Gene3D - 397 519 - -
Trre15g00334 957 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 19 953 - -
Trre15g00334 957 SFLD p-type atpase 611 888 IPR044492 -
Trre15g00334 957 NCBIfam HAD-IC family P-type ATPase 382 913 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre15g00334 957 ProSitePatterns Heavy-metal-associated domain. 107 136 IPR017969 GO:0046872
Trre15g00334 957 FunFam Probable copper-transporting ATPase HMA5 754 893 - -
Trre15g00334 957 SUPERFAMILY HAD-like 627 942 IPR036412 -
Trre15g00334 957 ProSitePatterns Heavy-metal-associated domain. 31 60 IPR017969 GO:0046872
Trre15g00334 957 PRINTS Copper-transporting ATPase signature 813 830 - -
Trre15g00334 957 PRINTS Copper-transporting ATPase signature 538 552 - -
Trre15g00334 957 PRINTS Copper-transporting ATPase signature 327 346 - -
Trre15g00334 957 PRINTS Copper-transporting ATPase signature 909 923 - -
Trre15g00334 957 PRINTS Copper-transporting ATPase signature 379 398 - -
Trre15g00334 957 PRINTS Copper-transporting ATPase 1 signature 52 75 - -
Trre15g00334 957 PRINTS Copper-transporting ATPase 1 signature 81 101 - -
Trre15g00334 957 PRINTS Copper-transporting ATPase 1 signature 26 51 - -
Trre15g00334 957 PRINTS Copper-transporting ATPase 1 signature 125 146 - -
Trre15g00334 957 FunFam ATPase copper transporting beta 23 95 - -
Trre15g00334 957 FunFam Copper-transporting ATPase 1, putative 397 519 - -
Trre15g00334 957 Pfam Heavy-metal-associated domain 28 89 IPR006121 GO:0046872
Trre15g00334 957 Pfam Heavy-metal-associated domain 104 164 IPR006121 GO:0046872
Trre15g00334 957 NCBIfam heavy metal translocating P-type ATPase 342 945 IPR027256 GO:0006812|GO:0016020|GO:0019829
Trre15g00334 957 ProSiteProfiles Heavy-metal-associated domain profile. 101 167 IPR006121 GO:0046872
Trre15g00334 957 Gene3D - 21 91 - -
Trre15g00334 957 SUPERFAMILY Calcium ATPase, transmembrane domain M 374 622 IPR023298 -
Trre15g00334 957 Pfam E1-E2 ATPase 428 607 - -
Trre15g00334 957 Gene3D - 714 767 IPR023299 GO:0000166
Trre15g00334 957 Gene3D - 636 713 IPR023299 GO:0000166
Trre15g00334 957 CDD P-type_ATPase_Cu-like 270 932 - -
Trre15g00334 957 SUPERFAMILY Calcium ATPase, transduction domain A 429 515 IPR008250 -
Trre15g00334 957 Gene3D - 596 893 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00334 Trre-Chr15 2312572 2318862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00334 29 951 Primary Pumps ATPases AT1G63440 57.097 0.0 1063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00334 K17686 - gmx:100793894 1607.04